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8V6V

Cryo-EM structure of doubly-bound SNF2h-nucleosome complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.2polymer13515271.92UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)
2B, F
(B, F)
Histone H4polymer10211263.22UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
3C, G
(C, G)
Histone H2A type 1polymer12913978.22UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
Xenopus laevis (African clawed frog)
4D, H
(D, H)
Histone H2Bpolymer12213524.82UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (African clawed frog)H2B1.1
5I
(I)
Widom 601 DNA (147-mer) with 60 base pairs flanking DNA (reverse strand)polymer20764200.91synthetic construct
6J
(J)
Widom 601 DNA (147-mer) with 60 base pairs flanking DNA (forward strand)polymer20763626.51synthetic construct
7K, L
(W, X)
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5polymer1052122089.32UniProt (O60264)
Pfam (PF00176)
Pfam (PF00271)
Pfam (PF09110)
Pfam (PF09111)
Homo sapiens (human)
8M, O
(W, X)
ADENOSINE-5'-DIPHOSPHATEnon-polymer427.22Chemie (ADP)
9N, P
(W, X)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103engineered mutation
Ala 110Cys 111engineered mutation
C, G: 1 - 129 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 99Gly 100engineered mutation
Ser 123Ala 124engineered mutation
D, H: 1 - 122 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 29Ser 33engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight480082.2
Non-Polymers*Number of molecules4
Total formula weight903.0
All*Total formula weight480985.2
*Water molecules are not included.

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PDB entries from 2025-06-11

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