8V05
Crystal structure of mouse PLD3
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 5'-3' exonuclease PLD3 | polymer | 467 | 51856.2 | 1 | UniProt (O35405) Pfam (PF13918) | Mus musculus (house mouse) | |
| 2 | B (B) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 3 | C (C) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 4 | D (D) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G55220VL) | |||
| 5 | E, F, I (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 3 | Chemie (EDO) | |||
| 6 | G (A) | ACETATE ION | non-polymer | 59.0 | 1 | Chemie (ACT) | |||
| 7 | H (A) | CYSTEINE | non-polymer | 121.2 | 1 | Chemie (CYS) | |||
| 8 | J (A) | L(+)-TARTARIC ACID | non-polymer | 150.1 | 1 | Chemie (TLA) | |||
| 9 | K (A) | water | water | 18.0 | 199 | Chemie (HOH) |
Sequence modifications
A: 63 - 488 (UniProt: O35405)
| PDB | External Database | Details |
|---|---|---|
| His 22 | - | expression tag |
| His 23 | - | expression tag |
| His 24 | - | expression tag |
| His 25 | - | expression tag |
| His 26 | - | expression tag |
| His 27 | - | expression tag |
| Gly 28 | - | expression tag |
| Pro 29 | - | expression tag |
| Leu 30 | - | expression tag |
| Val 31 | - | expression tag |
| Asp 32 | - | expression tag |
| Val 33 | - | expression tag |
| Ala 34 | - | expression tag |
| Ser 35 | - | expression tag |
| Asn 36 | - | expression tag |
| Glu 37 | - | expression tag |
| Gln 38 | - | expression tag |
| Lys 39 | - | expression tag |
| Leu 40 | - | expression tag |
| Ile 41 | - | expression tag |
| Ser 42 | - | expression tag |
| Glu 43 | - | expression tag |
| Glu 44 | - | expression tag |
| Asp 45 | - | expression tag |
| Leu 46 | - | expression tag |
| Ala 47 | - | expression tag |
| Ser 48 | - | expression tag |
| Met 49 | - | expression tag |
| Thr 50 | - | expression tag |
| Gly 51 | - | expression tag |
| Gly 52 | - | expression tag |
| Gln 53 | - | expression tag |
| Gln 54 | - | expression tag |
| Met 55 | - | expression tag |
| Gly 56 | - | expression tag |
| Arg 57 | - | expression tag |
| Asp 58 | - | expression tag |
| Ile 59 | - | expression tag |
| Glu 60 | - | expression tag |
| Gly 61 | - | expression tag |
| Arg 62 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 51856.2 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 2246.0 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 516.5 | |
| All* | Total formula weight | 54618.7 |
