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Crystal Structure of compound 4 in complex with KRAS G12V C118S GDP and pVHL:ElonginC:ElonginB

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1D, HElongin-Bpolymer10411748.42UniProt (Q15370)
Pfam (PF00240)
In PDB
Homo sapiens (human)EloB,Elongin 18 kDa subunit,RNA polymerase II transcription factor SIII subunit B,SIII p18,Transcription elongation factor B polypeptide 2
2C, GElongin-Cpolymer9710974.62UniProt (Q15369)
Pfam (PF03931)
In PDB
Homo sapiens (human)EloC,Elongin 15 kDa subunit,RNA polymerase II transcription factor SIII subunit C,SIII p15,Transcription elongation factor B polypeptide 1
3B, Fvon Hippel-Lindau disease tumor suppressorpolymer16218702.32UniProt (P40337)
Pfam (PF01847)
Pfam (PF17211)
In PDB
Homo sapiens (human)Protein G7,pVHL
4A, EGTPase KRaspolymer17019354.82UniProt (P01116)
Pfam (PF00071)
In PDB
Homo sapiens (human)K-Ras 2,Ki-Ras,c-K-ras,c-Ki-ras
5B, F(2S,4R)-1-[(2R)-2-[3-[4-[(3S)-4-[4-[5-[(4S)-2-azanyl-3-cyano-4-methyl-6,7-dihydro-5H-1-benzothiophen-4-yl]-1,2,4-oxadiazol-3-yl]pyrimidin-2-yl]-3-methyl-1,4-diazepan-1-yl]butoxy]-1,2-oxazol-5-yl]-3-methyl-butanoyl]-N-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamidenon-polymer989.22Chemie (X53)
6A, EGUANOSINE-5'-DIPHOSPHATEnon-polymer443.22Chemie (GDP)
7A, EMAGNESIUM IONnon-polymer24.32Chemie (MG)
8waterwater18.023Chemie (HOH)
Sequence modifications
C, G: 17 - 112 (UniProt: Q15369)
PDBExternal DatabaseDetails
Met 16-initiating methionine
B, F: 54 - 213 (UniProt: P40337)
PDBExternal DatabaseDetails
Gly 52-expression tag
Ser 53-expression tag
A, E: 1 - 169 (UniProt: P01116)
PDBExternal DatabaseDetails
Gly 0-expression tag
Val 12Gly 12engineered mutation
Ser 118Cys 118engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight121560.3
Non-Polymers*Number of molecules6
Total formula weight2913.4
All*Total formula weight124473.7
*Water molecules are not included.

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PDB entries from 2024-07-17

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