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8OW0

Cryo-EM structure of CBF1-CCAN bound topologically to a centromeric CENP-A nucleosome

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(D)
C0N3 DNApolymer15347239.31Saccharomyces cerevisiae
2B
(E)
C0N3 DNApolymer15347194.21Saccharomyces cerevisiae
3C, F
(b, f)
Histone H4polymer10311395.42UniProt (P02309)
Pfam (PF15511)
Saccharomyces cerevisiae (baker's yeast)
4D, H
(d, h)
Histone H2B.1polymer13114280.42UniProt (P02293)
Pfam (PF00125)
Saccharomyces cerevisiae (baker's yeast)Suppressor of Ty protein 12
5E, J
(e, a)
Histone H3-like centromeric protein CSE4polymer22926885.42UniProt (P36012)
Pfam (PF00125)
Saccharomyces cerevisiae (baker's yeast)CENP-A homolog,CENPA homolog,Chromosome segregation protein 4
6G, I
(g, c)
Histone H2A.1polymer13214013.22UniProt (P04911)
Pfam (PF16211)
Pfam (PF00125)
Saccharomyces cerevisiae (baker's yeast)
7K, L
(A, B)
Centromere-binding protein 1polymer35139444.72UniProt (P17106)
Pfam (PF00010)
Saccharomyces cerevisiae (baker's yeast)CBP-1,Centromere promoter factor 1,Centromere-binding factor 1
8M
(H)
Inner kinetochore subunit MCM16polymer18121166.11UniProt (Q12262)
Pfam (PF20993)
Saccharomyces cerevisiae (baker's yeast)CENP-H homolog,Constitutive centromere-associated network protein MCM16,Minichromosome maintenance protein 16
9N
(I)
Inner kinetochore subunit CTF3polymer73384345.61UniProt (Q12748)Saccharomyces cerevisiae (baker's yeast)CENP-I homolog,Chromosome loss protein 3,Chromosome transmission fidelity protein 3,Constitutive centromere-associated network protein CTF3
10O
(K)
Inner kinetochore subunit MCM22polymer23927602.51UniProt (P47167)Saccharomyces cerevisiae (baker's yeast)CENP-K homolog,Constitutive centromere-associated network protein MCM22,Minichromosome maintenance protein 22
11P
(L)
Inner kinetochore subunit IML3polymer24528093.21UniProt (P38265)Saccharomyces cerevisiae (baker's yeast)CENP-L homolog,Constitutive centromere-associated network protein IML3,Increased minichromosome loss protein 3,Minichromosome maintenance protein 19
12Q
(N)
Inner kinetochore subunit CHL4polymer45852743.71UniProt (P38907)
Pfam (PF05238)
Saccharomyces cerevisiae (baker's yeast)CENP-N homolog,Chromosome loss protein 4,Chromosome transmission fidelity protein 17,Constitutive centromere-associated network protein CHL4,Minichromosome maintenance protein 17
13R
(O)
Inner kinetochore subunit MCM21polymer36843028.91UniProt (Q06675)
Pfam (PF09496)
Saccharomyces cerevisiae (baker's yeast)CENP-O homolog,Chromosome transmission fidelity protein 5,Constitutive centromere-associated network protein MCM21,Minichromosome maintenance protein 21
14S
(P)
Inner kinetochore subunit CTF19polymer36942841.11UniProt (Q02732)Saccharomyces cerevisiae (baker's yeast)CENP-P homolog,Chromosome transmission fidelity protein 19,Constitutive centromere-associated network protein CTF19,Minichromosome maintenance protein 18
15T
(Q)
Inner kinetochore subunit OKP1polymer40647427.21UniProt (P53298)Saccharomyces cerevisiae (baker's yeast)CENP-Q homolog,Constitutive centromere-associated network protein OKP1,Outer kinetochore protein 1
16U
(T)
Inner kinetochore subunit CNN1polymer36141359.81UniProt (P43618)Saccharomyces cerevisiae (baker's yeast)CENP-T homolog,Co-purified with NNF1 protein 1,Constitutive centromere-associated network protein CNN1
17V
(U)
Inner kinetochore subunit AME1polymer32437506.71UniProt (P38313)
Pfam (PF20994)
Saccharomyces cerevisiae (baker's yeast)Associated with microtubules and essential protein 1,CENP-U homolog,Constitutive centromere-associated network protein AME1
18W
(W)
Inner kinetochore subunit WIP1polymer8910255.51UniProt (Q2V2P8)Saccharomyces cerevisiae (baker's yeast)CENP-W homolog,Constitutive centromere-associated network protein WIP1,W-like protein 1
19X
(Y)
Inner kinetochore subunit NKP1polymer23827006.51UniProt (Q12493)Saccharomyces cerevisiae (baker's yeast)Constitutive centromere-associated network protein NKP1,Non-essential kinetochore protein 1
20Y
(Z)
Inner kinetochore subunit NKP2polymer15317877.01UniProt (Q06162)
Pfam (PF09447)
Saccharomyces cerevisiae (baker's yeast)Constitutive centromere-associated network protein NKP2,Non-essential kinetochore protein 2
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains25
Total formula weight787725.5
All*Total formula weight787725.5
*Water molecules are not included.

237423

PDB entries from 2025-06-11

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