8OK9
Heterodimeric complex of Archaeoglobus fulgidus Argonaute protein Af1318 (AfAgo) with DNA and AfAgo-N protein containing N-L1-L2 domains
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Piwi protein AF_1318 | polymer | 441 | 50921.1 | 1 | UniProt (O28951) Pfam (PF02171) | Archaeoglobus fulgidus DSM 4304 | AfAgo,AfPiwi,PIWI/MID domain protein |
| 2 | B (C) | Archaeoglobus fulgidus AfAgo-N protein | polymer | 264 | 30575.8 | 1 | UniProt (A0A075WKW4) | Archaeoglobus fulgidus DSM 4304 | |
| 3 | C, D (R, S) | DNA (5'-D(P*AP*TP*CP*GP*AP*CP*CP*AP*GP*GP*CP*TP*AP*CP*G)-3') | polymer | 15 | 4579.0 | 2 | Escherichia coli | ||
| 4 | E (A) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 5 | F, G, H, I, J... (A, C, S) | ACETIC ACID | non-polymer | 60.1 | 8 | Chemie (ACY) | |||
| 6 | K, L, M, P, S... (A, C, S) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 6 | Chemie (EDO) | |||
| 7 | Q (C) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 8 | U, V, W, X (A, C, R, S) | water | water | 18.0 | 200 | Chemie (HOH) |
Sequence modifications
A: 1 - 427 (UniProt: O28951)
C: 1 - 250 (UniProt: A0A075WKW4)
| PDB | External Database | Details |
|---|---|---|
| Met -13 | - | initiating methionine |
| Gly -12 | - | expression tag |
| Ser -11 | - | expression tag |
| Ser -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| His -5 | - | expression tag |
| His -4 | - | expression tag |
| Ser -3 | - | expression tag |
| Gln -2 | - | expression tag |
| Asp -1 | - | expression tag |
| Pro 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met -13 | - | initiating methionine |
| Gly -12 | - | expression tag |
| Ser -11 | - | expression tag |
| Ser -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| His -5 | - | expression tag |
| His -4 | - | expression tag |
| Ser -3 | - | expression tag |
| Gln -2 | - | expression tag |
| Asp -1 | - | expression tag |
| Pro 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 90654.9 | |
| Non-Polymers* | Number of molecules | 16 |
| Total formula weight | 983.2 | |
| All* | Total formula weight | 91638.1 |
