8KDE
Cryo-EM structure of an intermediate-state complex during the process of photosystem II repair
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | B | Photosystem II CP47 reaction center protein | polymer | 508 | 56089.7 | 1 | UniProt (A0A218N8S0) Pfam (PF00421) UniProt (by SIFTS) (P37255) In PDB | Chlamydomonas reinhardtii | PSII 47 kDa protein,Protein CP-47 |
| 2 | D | Photosystem II D2 protein | polymer | 352 | 39474.0 | 1 | UniProt (P06007) Pfam (PF00124) In PDB | Chlamydomonas reinhardtii | PSII D2 protein,Photosystem Q(A) protein |
| 3 | E | Cytochrome b559 subunit alpha | polymer | 82 | 9312.6 | 1 | UniProt (P48268) Pfam (PF00283) Pfam (PF00284) In PDB | Chlamydomonas reinhardtii | PSII reaction center subunit V |
| 4 | F | Cytochrome b559 subunit beta | polymer | 44 | 4986.0 | 1 | UniProt (Q08363) Pfam (PF00283) In PDB | Chlamydomonas reinhardtii | PSII reaction center subunit VI |
| 5 | H | Photosystem II reaction center protein H | polymer | 88 | 9445.1 | 1 | UniProt (P22666) Pfam (PF00737) In PDB | Chlamydomonas reinhardtii | PSII-H,Photosystem II 8 kDa phosphoprotein |
| 6 | I | Photosystem II reaction center protein I | polymer | 37 | 4245.0 | 1 | UniProt (P59763) Pfam (PF02532) In PDB | Chlamydomonas reinhardtii | PSII-I,PSII 4.8 kDa protein |
| 7 | K | Photosystem II reaction center protein K | polymer | 46 | 5062.1 | 1 | UniProt (P18263) Pfam (PF02533) In PDB | Chlamydomonas reinhardtii | PSII-K |
| 8 | L | Photosystem II reaction center protein L | polymer | 38 | 4431.2 | 1 | UniProt (P32974) Pfam (PF02419) In PDB | Chlamydomonas reinhardtii | PSII-L |
| 9 | M | Photosystem II reaction center protein M | polymer | 34 | 3762.4 | 1 | UniProt (P92277) Pfam (PF05151) In PDB | Chlamydomonas reinhardtii | PSII-M |
| 10 | T | Photosystem II reaction center protein T | polymer | 31 | 3639.4 | 1 | UniProt (P37256) Pfam (PF01405) In PDB | Chlamydomonas reinhardtii | |
| 11 | V | Photosystem II reaction center protein Ycf12 | polymer | 33 | 3333.1 | 1 | UniProt (P50370) Pfam (PF05969) In PDB | Chlamydomonas reinhardtii | |
| 12 | X | Uncharacterized protein | polymer | 101 | 9894.7 | 1 | UniProt (A8I846) Pfam (PF06596) In PDB | Chlamydomonas reinhardtii | |
| 13 | Z | Photosystem II reaction center protein Z | polymer | 62 | 6565.9 | 1 | UniProt (P92276) Pfam (PF01737) In PDB | Chlamydomonas reinhardtii | PSII-Z |
| 14 | G | Thylakoid enriched factor 14 (TEF14) | polymer | 196 | 20601.6 | 1 | UniProt (A8HY43) Pfam (PF20675) In PDB | Chlamydomonas reinhardtii | |
| 15 | 3 | Photosystem II repair factor 1 (PRF1) | polymer | 131 | 13341.0 | 1 | UniProt (A0A2K3DWM2) In PDB | Chlamydomonas reinhardtii | |
| 16 | C | Photosystem II CP43 reaction center protein | polymer | 461 | 50680.7 | 1 | UniProt (P10898) Pfam (PF00421) In PDB | Chlamydomonas reinhardtii | PSII 43 kDa protein,Protein CP-43,Protein P6 |
| 17 | A | Photosystem II protein D1 | polymer | 352 | 39066.3 | 1 | UniProt (P07753) Pfam (PF00124) In PDB | Chlamydomonas reinhardtii | PSII D1 protein,32 kDa thylakoid membrane protein,Photosystem II Q(B) protein |
| 18 | 1 | Photosystem II repair factor 2 (PRF2) | polymer | 117 | 12002.0 | 1 | UniProt (A8HNG8) In PDB | Chlamydomonas reinhardtii | |
| 19 | B, A, C, D | CHLOROPHYLL A | non-polymer | 893.5 | 35 | Chemie (CLA) | |||
| 20 | H, K, B, Z, A... | BETA-CAROTENE | non-polymer | 536.9 | 10 | Chemie (BCR) | |||
| 21 | K, C, A, B, D | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 6 | Chemie (LMG) | |||
| 22 | K, L, X, A, B... | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 10 | Chemie (LHG) | |||
| 23 | D | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 1 | Chemie (PL9) | |||
| 24 | D | PHEOPHYTIN A | non-polymer | 871.2 | 2 | Chemie (PHO) | |||
| 25 | E | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 1 | Chemie (HEM) | |||
| 26 | X | RRR-ALPHA-TOCOPHERYLQUINONE | non-polymer | 446.7 | 1 | Chemie (VTQ) | |||
| 27 | C | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 3 | Chemie (DGD) | |||
| 28 | C | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 1 | Chemie (SQD) | |||
| 29 | A | BICARBONATE ION | non-polymer | 61.0 | 1 | Chemie (BCT) | |||
| 30 | A | FE (II) ION | non-polymer | 55.8 | 1 | Chemie (FE2) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 18 |
| Total formula weight | 295933.0 | |
| Non-Polymers* | Number of molecules | 72 |
| Total formula weight | 55908.2 | |
| All* | Total formula weight | 351841.1 |
