8KDE
Cryo-EM structure of an intermediate-state complex during the process of photosystem II repair
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005506 | molecular_function | iron ion binding |
A | 0009055 | molecular_function | electron transfer activity |
A | 0009523 | cellular_component | photosystem II |
A | 0009535 | cellular_component | chloroplast thylakoid membrane |
A | 0009635 | biological_process | response to herbicide |
A | 0009772 | biological_process | photosynthetic electron transport in photosystem II |
A | 0010242 | molecular_function | oxygen evolving activity |
A | 0015979 | biological_process | photosynthesis |
A | 0016168 | molecular_function | chlorophyll binding |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016682 | molecular_function | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor |
A | 0019684 | biological_process | photosynthesis, light reaction |
A | 0046872 | molecular_function | metal ion binding |
B | 0009521 | cellular_component | photosystem |
B | 0009523 | cellular_component | photosystem II |
B | 0009535 | cellular_component | chloroplast thylakoid membrane |
B | 0009579 | cellular_component | thylakoid |
B | 0009767 | biological_process | photosynthetic electron transport chain |
B | 0009772 | biological_process | photosynthetic electron transport in photosystem II |
B | 0015979 | biological_process | photosynthesis |
B | 0016020 | cellular_component | membrane |
B | 0016168 | molecular_function | chlorophyll binding |
B | 0019684 | biological_process | photosynthesis, light reaction |
C | 0005737 | cellular_component | cytoplasm |
C | 0009521 | cellular_component | photosystem |
C | 0009523 | cellular_component | photosystem II |
C | 0009535 | cellular_component | chloroplast thylakoid membrane |
C | 0009579 | cellular_component | thylakoid |
C | 0009767 | biological_process | photosynthetic electron transport chain |
C | 0009772 | biological_process | photosynthetic electron transport in photosystem II |
C | 0015979 | biological_process | photosynthesis |
C | 0016020 | cellular_component | membrane |
C | 0016168 | molecular_function | chlorophyll binding |
C | 0019684 | biological_process | photosynthesis, light reaction |
C | 0046872 | molecular_function | metal ion binding |
D | 0005506 | molecular_function | iron ion binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0009055 | molecular_function | electron transfer activity |
D | 0009523 | cellular_component | photosystem II |
D | 0009535 | cellular_component | chloroplast thylakoid membrane |
D | 0009772 | biological_process | photosynthetic electron transport in photosystem II |
D | 0010242 | molecular_function | oxygen evolving activity |
D | 0015979 | biological_process | photosynthesis |
D | 0016020 | cellular_component | membrane |
D | 0016168 | molecular_function | chlorophyll binding |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0019684 | biological_process | photosynthesis, light reaction |
D | 0046872 | molecular_function | metal ion binding |
E | 0005506 | molecular_function | iron ion binding |
E | 0009055 | molecular_function | electron transfer activity |
E | 0009523 | cellular_component | photosystem II |
E | 0009535 | cellular_component | chloroplast thylakoid membrane |
E | 0009536 | cellular_component | plastid |
E | 0009539 | cellular_component | photosystem II reaction center |
E | 0009579 | cellular_component | thylakoid |
E | 0009767 | biological_process | photosynthetic electron transport chain |
E | 0015979 | biological_process | photosynthesis |
E | 0016020 | cellular_component | membrane |
E | 0019684 | biological_process | photosynthesis, light reaction |
E | 0020037 | molecular_function | heme binding |
E | 0046872 | molecular_function | metal ion binding |
F | 0005506 | molecular_function | iron ion binding |
F | 0009055 | molecular_function | electron transfer activity |
F | 0009523 | cellular_component | photosystem II |
F | 0009535 | cellular_component | chloroplast thylakoid membrane |
F | 0009536 | cellular_component | plastid |
F | 0009539 | cellular_component | photosystem II reaction center |
F | 0009579 | cellular_component | thylakoid |
F | 0009767 | biological_process | photosynthetic electron transport chain |
F | 0015979 | biological_process | photosynthesis |
F | 0016020 | cellular_component | membrane |
F | 0019684 | biological_process | photosynthesis, light reaction |
F | 0020037 | molecular_function | heme binding |
F | 0046872 | molecular_function | metal ion binding |
G | 0010206 | biological_process | photosystem II repair |
H | 0009523 | cellular_component | photosystem II |
H | 0009535 | cellular_component | chloroplast thylakoid membrane |
H | 0015979 | biological_process | photosynthesis |
H | 0016020 | cellular_component | membrane |
H | 0042301 | molecular_function | phosphate ion binding |
H | 0050821 | biological_process | protein stabilization |
I | 0005737 | cellular_component | cytoplasm |
I | 0009523 | cellular_component | photosystem II |
I | 0009535 | cellular_component | chloroplast thylakoid membrane |
I | 0009539 | cellular_component | photosystem II reaction center |
I | 0015979 | biological_process | photosynthesis |
I | 0016020 | cellular_component | membrane |
K | 0005737 | cellular_component | cytoplasm |
K | 0009523 | cellular_component | photosystem II |
K | 0009535 | cellular_component | chloroplast thylakoid membrane |
K | 0009539 | cellular_component | photosystem II reaction center |
K | 0015979 | biological_process | photosynthesis |
L | 0005737 | cellular_component | cytoplasm |
L | 0009523 | cellular_component | photosystem II |
L | 0009535 | cellular_component | chloroplast thylakoid membrane |
L | 0009539 | cellular_component | photosystem II reaction center |
L | 0009579 | cellular_component | thylakoid |
L | 0015979 | biological_process | photosynthesis |
L | 0016020 | cellular_component | membrane |
M | 0005737 | cellular_component | cytoplasm |
M | 0009523 | cellular_component | photosystem II |
M | 0009535 | cellular_component | chloroplast thylakoid membrane |
M | 0015979 | biological_process | photosynthesis |
M | 0016020 | cellular_component | membrane |
M | 0019684 | biological_process | photosynthesis, light reaction |
T | 0005737 | cellular_component | cytoplasm |
T | 0009523 | cellular_component | photosystem II |
T | 0009535 | cellular_component | chloroplast thylakoid membrane |
T | 0009539 | cellular_component | photosystem II reaction center |
T | 0015979 | biological_process | photosynthesis |
T | 0016020 | cellular_component | membrane |
V | 0009523 | cellular_component | photosystem II |
V | 0009535 | cellular_component | chloroplast thylakoid membrane |
V | 0015979 | biological_process | photosynthesis |
V | 0016020 | cellular_component | membrane |
X | 0009523 | cellular_component | photosystem II |
X | 0015979 | biological_process | photosynthesis |
X | 0016020 | cellular_component | membrane |
Z | 0009523 | cellular_component | photosystem II |
Z | 0009535 | cellular_component | chloroplast thylakoid membrane |
Z | 0009539 | cellular_component | photosystem II reaction center |
Z | 0015979 | biological_process | photosynthesis |
Z | 0042549 | biological_process | photosystem II stabilization |
Functional Information from PROSITE/UniProt
site_id | PS00244 |
Number of Residues | 27 |
Details | REACTION_CENTER Photosynthetic reaction center proteins signature. NilmhPfHmlGvagvfggslfsAmHGS |
Chain | Residue | Details |
A | ASN191-SER217 | |
D | ASN190-ALA216 |
site_id | PS00537 |
Number of Residues | 15 |
Details | CYTOCHROME_B559 Cytochrome b559 subunits heme-binding site signature. LtSIRYwvIHSITVP |
Chain | Residue | Details |
E | LEU14-PRO28 | |
F | ILE14-PRO28 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI2 |
Number of Residues | 90 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01495","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 85 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 5 |
Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"P56761","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI7 |
Number of Residues | 14 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI8 |
Number of Residues | 1 |
Details | Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI9 |
Number of Residues | 16 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI10 |
Number of Residues | 1 |
Details | Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI11 |
Number of Residues | 20 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00752","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI12 |
Number of Residues | 20 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01316","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI13 |
Number of Residues | 20 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00441","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI14 |
Number of Residues | 20 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01317","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI15 |
Number of Residues | 20 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00438","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI16 |
Number of Residues | 20 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00808","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI17 |
Number of Residues | 20 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01329","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI18 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00644","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI20 |
Number of Residues | 132 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01496","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI21 |
Number of Residues | 1 |
Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01496","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI22 |
Number of Residues | 81 |
Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI23 |
Number of Residues | 2 |
Details | Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI24 |
Number of Residues | 8 |
Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI25 |
Number of Residues | 1 |
Details | Site: {"description":"Tyrosine radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI26 |
Number of Residues | 1 |
Details | Site: {"description":"Stabilizes free radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |