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8KDE

Cryo-EM structure of an intermediate-state complex during the process of photosystem II repair

Functional Information from GO Data
ChainGOidnamespacecontents
A0005506molecular_functioniron ion binding
A0009055molecular_functionelectron transfer activity
A0009523cellular_componentphotosystem II
A0009535cellular_componentchloroplast thylakoid membrane
A0009635biological_processresponse to herbicide
A0009772biological_processphotosynthetic electron transport in photosystem II
A0010242molecular_functionoxygen evolving activity
A0015979biological_processphotosynthesis
A0016168molecular_functionchlorophyll binding
A0016491molecular_functionoxidoreductase activity
A0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
A0019684biological_processphotosynthesis, light reaction
A0046872molecular_functionmetal ion binding
B0009521cellular_componentphotosystem
B0009523cellular_componentphotosystem II
B0009535cellular_componentchloroplast thylakoid membrane
B0009579cellular_componentthylakoid
B0009767biological_processphotosynthetic electron transport chain
B0009772biological_processphotosynthetic electron transport in photosystem II
B0015979biological_processphotosynthesis
B0016020cellular_componentmembrane
B0016168molecular_functionchlorophyll binding
B0019684biological_processphotosynthesis, light reaction
C0005737cellular_componentcytoplasm
C0009521cellular_componentphotosystem
C0009523cellular_componentphotosystem II
C0009535cellular_componentchloroplast thylakoid membrane
C0009579cellular_componentthylakoid
C0009767biological_processphotosynthetic electron transport chain
C0009772biological_processphotosynthetic electron transport in photosystem II
C0015979biological_processphotosynthesis
C0016020cellular_componentmembrane
C0016168molecular_functionchlorophyll binding
C0019684biological_processphotosynthesis, light reaction
C0046872molecular_functionmetal ion binding
D0005506molecular_functioniron ion binding
D0005737cellular_componentcytoplasm
D0009055molecular_functionelectron transfer activity
D0009523cellular_componentphotosystem II
D0009535cellular_componentchloroplast thylakoid membrane
D0009772biological_processphotosynthetic electron transport in photosystem II
D0010242molecular_functionoxygen evolving activity
D0015979biological_processphotosynthesis
D0016020cellular_componentmembrane
D0016168molecular_functionchlorophyll binding
D0016491molecular_functionoxidoreductase activity
D0019684biological_processphotosynthesis, light reaction
D0046872molecular_functionmetal ion binding
E0005506molecular_functioniron ion binding
E0009055molecular_functionelectron transfer activity
E0009523cellular_componentphotosystem II
E0009535cellular_componentchloroplast thylakoid membrane
E0009536cellular_componentplastid
E0009539cellular_componentphotosystem II reaction center
E0009579cellular_componentthylakoid
E0009767biological_processphotosynthetic electron transport chain
E0015979biological_processphotosynthesis
E0016020cellular_componentmembrane
E0019684biological_processphotosynthesis, light reaction
E0020037molecular_functionheme binding
E0046872molecular_functionmetal ion binding
F0005506molecular_functioniron ion binding
F0009055molecular_functionelectron transfer activity
F0009523cellular_componentphotosystem II
F0009535cellular_componentchloroplast thylakoid membrane
F0009536cellular_componentplastid
F0009539cellular_componentphotosystem II reaction center
F0009579cellular_componentthylakoid
F0009767biological_processphotosynthetic electron transport chain
F0015979biological_processphotosynthesis
F0016020cellular_componentmembrane
F0019684biological_processphotosynthesis, light reaction
F0020037molecular_functionheme binding
F0046872molecular_functionmetal ion binding
G0010206biological_processphotosystem II repair
H0009523cellular_componentphotosystem II
H0009535cellular_componentchloroplast thylakoid membrane
H0015979biological_processphotosynthesis
H0016020cellular_componentmembrane
H0042301molecular_functionphosphate ion binding
H0050821biological_processprotein stabilization
I0005737cellular_componentcytoplasm
I0009523cellular_componentphotosystem II
I0009535cellular_componentchloroplast thylakoid membrane
I0009539cellular_componentphotosystem II reaction center
I0015979biological_processphotosynthesis
I0016020cellular_componentmembrane
K0005737cellular_componentcytoplasm
K0009523cellular_componentphotosystem II
K0009535cellular_componentchloroplast thylakoid membrane
K0009539cellular_componentphotosystem II reaction center
K0015979biological_processphotosynthesis
L0005737cellular_componentcytoplasm
L0009523cellular_componentphotosystem II
L0009535cellular_componentchloroplast thylakoid membrane
L0009539cellular_componentphotosystem II reaction center
L0009579cellular_componentthylakoid
L0015979biological_processphotosynthesis
L0016020cellular_componentmembrane
M0005737cellular_componentcytoplasm
M0009523cellular_componentphotosystem II
M0009535cellular_componentchloroplast thylakoid membrane
M0015979biological_processphotosynthesis
M0016020cellular_componentmembrane
M0019684biological_processphotosynthesis, light reaction
T0005737cellular_componentcytoplasm
T0009523cellular_componentphotosystem II
T0009535cellular_componentchloroplast thylakoid membrane
T0009539cellular_componentphotosystem II reaction center
T0015979biological_processphotosynthesis
T0016020cellular_componentmembrane
V0009523cellular_componentphotosystem II
V0009535cellular_componentchloroplast thylakoid membrane
V0015979biological_processphotosynthesis
V0016020cellular_componentmembrane
X0009523cellular_componentphotosystem II
X0015979biological_processphotosynthesis
X0016020cellular_componentmembrane
Z0009523cellular_componentphotosystem II
Z0009535cellular_componentchloroplast thylakoid membrane
Z0009539cellular_componentphotosystem II reaction center
Z0015979biological_processphotosynthesis
Z0042549biological_processphotosystem II stabilization
Functional Information from PROSITE/UniProt
site_idPS00244
Number of Residues27
DetailsREACTION_CENTER Photosynthetic reaction center proteins signature. NilmhPfHmlGvagvfggslfsAmHGS
ChainResidueDetails
AASN191-SER217
DASN190-ALA216

site_idPS00537
Number of Residues15
DetailsCYTOCHROME_B559 Cytochrome b559 subunits heme-binding site signature. LtSIRYwvIHSITVP
ChainResidueDetails
ELEU14-PRO28
FILE14-PRO28

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI2
Number of Residues90
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01495","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues85
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues5
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"P56761","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues14
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues1
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues16
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues1
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues20
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00752","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues20
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01316","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues20
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00441","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI14
Number of Residues20
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01317","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI15
Number of Residues20
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00438","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI16
Number of Residues20
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00808","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI17
Number of Residues20
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01329","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI18
Number of Residues40
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00644","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI20
Number of Residues132
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01496","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI21
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01496","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI22
Number of Residues81
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI23
Number of Residues2
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI24
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI25
Number of Residues1
DetailsSite: {"description":"Tyrosine radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI26
Number of Residues1
DetailsSite: {"description":"Stabilizes free radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

242842

PDB entries from 2025-10-08

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