8KDE

Cryo-EM structure of an intermediate-state complex during the process of photosystem II repair

Functional Information from GO Data

Chain	GOid	namespace	contents
3	0016020	cellular_component	membrane
A	0005506	molecular_function	iron ion binding
A	0009055	molecular_function	electron transfer activity
A	0009507	cellular_component	chloroplast
A	0009523	cellular_component	photosystem II
A	0009535	cellular_component	chloroplast thylakoid membrane
A	0009579	cellular_component	thylakoid
A	0009635	biological_process	response to herbicide
A	0009772	biological_process	photosynthetic electron transport in photosystem II
A	0010242	molecular_function	oxygen evolving activity
A	0015979	biological_process	photosynthesis
A	0016020	cellular_component	membrane
A	0016168	molecular_function	chlorophyll binding
A	0016491	molecular_function	oxidoreductase activity
A	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
A	0019684	biological_process	photosynthesis, light reaction
A	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
A	0046872	molecular_function	metal ion binding
B	0009507	cellular_component	chloroplast
B	0009521	cellular_component	photosystem
B	0009523	cellular_component	photosystem II
B	0009535	cellular_component	chloroplast thylakoid membrane
B	0009579	cellular_component	thylakoid
B	0009767	biological_process	photosynthetic electron transport chain
B	0009772	biological_process	photosynthetic electron transport in photosystem II
B	0015979	biological_process	photosynthesis
B	0016020	cellular_component	membrane
B	0016168	molecular_function	chlorophyll binding
B	0019684	biological_process	photosynthesis, light reaction
B	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
C	0005737	cellular_component	cytoplasm
C	0009507	cellular_component	chloroplast
C	0009521	cellular_component	photosystem
C	0009523	cellular_component	photosystem II
C	0009535	cellular_component	chloroplast thylakoid membrane
C	0009579	cellular_component	thylakoid
C	0009767	biological_process	photosynthetic electron transport chain
C	0009772	biological_process	photosynthetic electron transport in photosystem II
C	0015979	biological_process	photosynthesis
C	0016020	cellular_component	membrane
C	0016168	molecular_function	chlorophyll binding
C	0019684	biological_process	photosynthesis, light reaction
C	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
C	0046872	molecular_function	metal ion binding
D	0005506	molecular_function	iron ion binding
D	0009055	molecular_function	electron transfer activity
D	0009507	cellular_component	chloroplast
D	0009523	cellular_component	photosystem II
D	0009535	cellular_component	chloroplast thylakoid membrane
D	0009579	cellular_component	thylakoid
D	0009772	biological_process	photosynthetic electron transport in photosystem II
D	0010242	molecular_function	oxygen evolving activity
D	0015979	biological_process	photosynthesis
D	0016020	cellular_component	membrane
D	0016168	molecular_function	chlorophyll binding
D	0016491	molecular_function	oxidoreductase activity
D	0019684	biological_process	photosynthesis, light reaction
D	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
D	0046872	molecular_function	metal ion binding
E	0005506	molecular_function	iron ion binding
E	0009055	molecular_function	electron transfer activity
E	0009507	cellular_component	chloroplast
E	0009523	cellular_component	photosystem II
E	0009535	cellular_component	chloroplast thylakoid membrane
E	0009536	cellular_component	plastid
E	0009539	cellular_component	photosystem II reaction center
E	0009579	cellular_component	thylakoid
E	0009767	biological_process	photosynthetic electron transport chain
E	0015979	biological_process	photosynthesis
E	0016020	cellular_component	membrane
E	0019684	biological_process	photosynthesis, light reaction
E	0020037	molecular_function	heme binding
E	0046872	molecular_function	metal ion binding
F	0005506	molecular_function	iron ion binding
F	0009055	molecular_function	electron transfer activity
F	0009507	cellular_component	chloroplast
F	0009523	cellular_component	photosystem II
F	0009535	cellular_component	chloroplast thylakoid membrane
F	0009536	cellular_component	plastid
F	0009539	cellular_component	photosystem II reaction center
F	0009579	cellular_component	thylakoid
F	0009767	biological_process	photosynthetic electron transport chain
F	0015979	biological_process	photosynthesis
F	0016020	cellular_component	membrane
F	0019684	biological_process	photosynthesis, light reaction
F	0020037	molecular_function	heme binding
F	0046872	molecular_function	metal ion binding
G	0010206	biological_process	photosystem II repair
H	0009507	cellular_component	chloroplast
H	0009523	cellular_component	photosystem II
H	0009535	cellular_component	chloroplast thylakoid membrane
H	0009579	cellular_component	thylakoid
H	0015979	biological_process	photosynthesis
H	0016020	cellular_component	membrane
H	0042301	molecular_function	phosphate ion binding
H	0050821	biological_process	protein stabilization
I	0005737	cellular_component	cytoplasm
I	0009507	cellular_component	chloroplast
I	0009523	cellular_component	photosystem II
I	0009535	cellular_component	chloroplast thylakoid membrane
I	0009539	cellular_component	photosystem II reaction center
I	0009579	cellular_component	thylakoid
I	0015979	biological_process	photosynthesis
I	0016020	cellular_component	membrane
K	0005737	cellular_component	cytoplasm
K	0009507	cellular_component	chloroplast
K	0009523	cellular_component	photosystem II
K	0009535	cellular_component	chloroplast thylakoid membrane
K	0009539	cellular_component	photosystem II reaction center
K	0009579	cellular_component	thylakoid
K	0015979	biological_process	photosynthesis
K	0016020	cellular_component	membrane
L	0005737	cellular_component	cytoplasm
L	0009507	cellular_component	chloroplast
L	0009523	cellular_component	photosystem II
L	0009535	cellular_component	chloroplast thylakoid membrane
L	0009539	cellular_component	photosystem II reaction center
L	0009579	cellular_component	thylakoid
L	0015979	biological_process	photosynthesis
L	0016020	cellular_component	membrane
M	0005737	cellular_component	cytoplasm
M	0009507	cellular_component	chloroplast
M	0009523	cellular_component	photosystem II
M	0009535	cellular_component	chloroplast thylakoid membrane
M	0009579	cellular_component	thylakoid
M	0015979	biological_process	photosynthesis
M	0016020	cellular_component	membrane
M	0019684	biological_process	photosynthesis, light reaction
T	0005737	cellular_component	cytoplasm
T	0009507	cellular_component	chloroplast
T	0009523	cellular_component	photosystem II
T	0009535	cellular_component	chloroplast thylakoid membrane
T	0009539	cellular_component	photosystem II reaction center
T	0009579	cellular_component	thylakoid
T	0015979	biological_process	photosynthesis
T	0016020	cellular_component	membrane
V	0009507	cellular_component	chloroplast
V	0009523	cellular_component	photosystem II
V	0009535	cellular_component	chloroplast thylakoid membrane
V	0009579	cellular_component	thylakoid
V	0015979	biological_process	photosynthesis
V	0016020	cellular_component	membrane
X	0009523	cellular_component	photosystem II
X	0015979	biological_process	photosynthesis
X	0016020	cellular_component	membrane
Z	0009507	cellular_component	chloroplast
Z	0009523	cellular_component	photosystem II
Z	0009535	cellular_component	chloroplast thylakoid membrane
Z	0009539	cellular_component	photosystem II reaction center
Z	0009579	cellular_component	thylakoid
Z	0015979	biological_process	photosynthesis
Z	0016020	cellular_component	membrane
Z	0042549	biological_process	photosystem II stabilization

Functional Information from PROSITE/UniProt

site_id	PS00244
Number of Residues	27
Details	REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlgaallcAiHGA

Chain	Residue	Details
D	ASN190-ALA216
A	ASN191-SER217

---

site_id	PS00537
Number of Residues	15
Details	CYTOCHROME_B559 Cytochrome b559 subunits heme-binding site signature. IfTVRWlaIHGIAVP

Chain	Residue	Details
F	ILE14-PRO28
E	LEU14-PRO28

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	90
Details	TRANSMEM: Helical => ECO:0000255|HAMAP-Rule:MF_01495

Chain	Residue	Details
B	SER21-SER36
B	ILE101-TRP115
B	GLY140-PHE156
B	ILE203-CYS218
B	VAL237-VAL252
B	CYS457-ARG472

---

site_id	SWS_FT_FI2
Number of Residues	2
Details	BINDING: axial binding residue => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	HIS118
A	HIS198

---

site_id	SWS_FT_FI3
Number of Residues	10
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	TYR126
A	ALA344
A	ASP170
A	GLU189
A	HIS215
A	SER264
A	HIS272
A	HIS332
A	GLU333
A	ASP342

---

site_id	SWS_FT_FI4
Number of Residues	1
Details	SITE: Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	TYR161

---

site_id	SWS_FT_FI5
Number of Residues	1
Details	SITE: Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	HIS190

---

site_id	SWS_FT_FI6
Number of Residues	1
Details	SITE: Cleavage; by CTPA => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	ALA344

---

site_id	SWS_FT_FI7
Number of Residues	1
Details	MOD_RES: Phosphothreonine => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	THR2

---