8ILH
The crystal structure of dG(Se-Sp)-DNA:Pol X product binary complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Repair DNA polymerase X | polymer | 177 | 20522.6 | 4 | UniProt (P42494) Pfam (PF01909) Pfam (PF14791) | African swine fever virus (strain Badajoz 1971 Vero-adapted) (Ba71V ASFV) | Pol X,AsfvPolX |
| 2 | E, F, G, H (E, F, G, H) | DNA (5'-D(*CP*GP*GP*AP*TP*CP*C)-3') | polymer | 7 | 2098.4 | 4 | synthetic construct | ||
| 3 | I, J, O, P, R... (A, B, C, D) | MAGNESIUM ION | non-polymer | 24.3 | 8 | Chemie (MG) | |||
| 4 | K, L, M, Q, T... (A, B, C, D) | SULFATE ION | non-polymer | 96.1 | 8 | Chemie (SO4) | |||
| 5 | N (B) | [[(2R,3S,5R)-5-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-selanyl-phosphoryl] dihydrogen phosphate | non-polymer | 490.2 | 1 | Chemie (8EB) | |||
| 6 | AA, BA, Z (G, H, E) | 2'-DEOXYGUANOSINE-5'-MONOSELENOPHOSPHATE | non-polymer | 410.2 | 3 | Chemie (GMS) | |||
| 7 | CA, DA, EA, FA, GA... (A, B, C, D, E...) | water | water | 18.0 | 564 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 174 (UniProt: P42494)
| PDB | External Database | Details |
|---|---|---|
| Gly -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Gly 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 90484.2 | |
| Non-Polymers* | Number of molecules | 20 |
| Total formula weight | 2683.7 | |
| All* | Total formula weight | 93167.8 |
