8G46
Cryo-EM structure of DDB1deltaB-DDA1-DCAF16-BRD4(BD2)-MMH2
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA damage-binding protein 1 | polymer | 864 | 96425.6 | 1 | UniProt (Q16531) Pfam (PF10433) Pfam (PF03178) In PDB | Homo sapiens (human) | DDB p127 subunit,DNA damage-binding protein a,DDBa,Damage-specific DNA-binding protein 1,HBV X-associated protein 1,XAP-1,UV-damaged DNA-binding factor,UV-damaged DNA-binding protein 1,UV-DDB 1,XPE-binding factor,XPE-BF,Xeroderma pigmentosum group E-complementing protein,XPCe |
2 | B | DDB1- and CUL4-associated factor 16 | polymer | 220 | 24547.7 | 1 | UniProt (Q9NXF7) Pfam (PF15349) In PDB | Homo sapiens (human) | |
3 | C | Bromodomain-containing protein 4 | polymer | 129 | 14899.1 | 1 | UniProt (O60885) Pfam (PF00439) In PDB | Homo sapiens (human) | Protein HUNK1 |
4 | E | DET1- and DDB1-associated protein 1 | polymer | 106 | 12183.6 | 1 | UniProt (Q9BW61) Pfam (PF10172) In PDB | Homo sapiens (human) | Placenta cross-immune reaction antigen 1,PCIA-1 |
5 | B | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
6 | B | tert-butyl [(6S,10P)-4-{4-[(ethanesulfonyl)amino]phenyl}-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]acetate | non-polymer | 529.7 | 1 | Chemie (YK3) | |||
7 | water | water | 18.0 | 110 | Chemie (HOH) |
Sequence modifications
A: 1 - 699 (UniProt: Q16531)
A: 706 - 1140 (UniProt: Q16531)
B: 1 - 216 (UniProt: Q9NXF7)
C: 333 - 460 (UniProt: O60885)
E: 1 - 102 (UniProt: Q9BW61)
PDB | External Database | Details |
---|---|---|
Met -27 | - | expression tag |
Gly -26 | - | expression tag |
Ser -25 | - | expression tag |
Ser -24 | - | expression tag |
His -23 | - | expression tag |
His -22 | - | expression tag |
His -21 | - | expression tag |
His -20 | - | expression tag |
His -19 | - | expression tag |
His -18 | - | expression tag |
Ser -17 | - | expression tag |
Ala -16 | - | expression tag |
Ala -15 | - | expression tag |
His -14 | - | expression tag |
Ile -13 | - | expression tag |
Val -12 | - | expression tag |
Met -11 | - | expression tag |
Val -10 | - | expression tag |
Asp -9 | - | expression tag |
Ala -8 | - | expression tag |
Tyr -7 | - | expression tag |
Lys -6 | - | expression tag |
Pro -5 | - | expression tag |
Thr -4 | - | expression tag |
Lys -3 | - | expression tag |
Gly -2 | - | expression tag |
Gly -1 | - | expression tag |
Arg 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly 700 | - | linker |
Asn 701 | - | linker |
Gly 702 | - | linker |
Asn 703 | - | linker |
Ser 704 | - | linker |
Gly 705 | - | linker |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Gly -2 | - | expression tag |
Gly -1 | - | expression tag |
Arg 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly 332 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Gly -2 | - | expression tag |
Gly -1 | - | expression tag |
Arg 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 148056.0 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 595.1 | |
All* | Total formula weight | 148651.1 |