8FY0

E3:PROTAC:target ternary complex structure (VCB/753b/BCL-xL)

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	von Hippel-Lindau disease tumor suppressor	polymer	180	20729.5	1	UniProt (P40337) Pfam (PF01847) Pfam (PF17211) In PDB	Homo sapiens (human)	Protein G7,pVHL
2	B	Elongin-B	polymer	118	13179.8	1	UniProt (Q15370) Pfam (PF00240) In PDB	Homo sapiens (human)	EloB,Elongin 18 kDa subunit,RNA polymerase II transcription factor SIII subunit B,SIII p18,Transcription elongation factor B polypeptide 2
3	C	Elongin-C	polymer	97	10914.5	1	UniProt (Q15369) Pfam (PF03931) In PDB	Homo sapiens (human)	EloC,Elongin 15 kDa subunit,RNA polymerase II transcription factor SIII subunit C,SIII p15,Transcription elongation factor B polypeptide 1
4	D	Bcl-2-like protein 1	polymer	232	25977.5	1	UniProt (Q07817) Pfam (PF02180) Pfam (PF00452) In PDB	Homo sapiens (human)	Bcl2-L-1,Apoptosis regulator Bcl-X
5	A	CACODYLIC ACID	non-polymer		138.0	1	Chemie (CAD)
6	A, B	GLYCEROL	non-polymer		92.1	2	Chemie (GOL)
7	D	N-[8-(4-{[(1R,3R,4S)-4-(4-chlorophenyl)-1-methyl-3-{[4-(4-{[4-{[(2R)-4-(morpholin-4-yl)-1-(phenylsulfanyl)butan-2-yl]amino}-3-(trifluoromethanesulfonyl)benzene-1-sulfonyl]carbamoyl}phenyl)piperazin-1-yl]methyl}cyclohexyl]methyl}piperazin-1-yl)-8-oxooctanoyl]-3-methyl-L-valyl-(4R)-4-hydroxy-N-{(1S)-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl}-L-prolinamide	non-polymer		1640.5	1	Chemie (YF8)

Sequence modifications

A: 54 - 213 (UniProt: P40337)

PDB	External Database	Details
Met 34	-	expression tag
Gly 35	-	expression tag
Ser 36	-	expression tag
Ser 37	-	expression tag
His 38	-	expression tag
His 39	-	expression tag
His 40	-	expression tag
His 41	-	expression tag
His 42	-	expression tag
His 43	-	expression tag
Ser 44	-	expression tag
Ser 45	-	expression tag
Gly 46	-	expression tag
Leu 47	-	expression tag
Val 48	-	expression tag
Pro 49	-	expression tag
Arg 50	-	expression tag
Gly 51	-	expression tag
Ser 52	-	expression tag
His 53	-	expression tag

C: 17 - 112 (UniProt: Q15369)

PDB	External Database	Details
Ala 16	-	expression tag

D: 1 - 212 (UniProt: Q07817)

PDB	External Database	Details
Met -19	-	expression tag
Gly -18	-	expression tag
Ser -17	-	expression tag
Ser -16	-	expression tag
His -15	-	expression tag
His -14	-	expression tag
His -13	-	expression tag
His -12	-	expression tag
His -11	-	expression tag
His -10	-	expression tag
Ser -9	-	expression tag
Ser -8	-	expression tag
Gly -7	-	expression tag
Leu -6	-	expression tag
Val -5	-	expression tag
Pro -4	-	expression tag
Arg -3	-	expression tag
Gly -2	-	expression tag
Ser -1	-	expression tag
His 0	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	4
	Total formula weight	70801.3
Non-Polymers*	Number of molecules	4
	Total formula weight	1962.7
All*	Total formula weight	72764.0

*Water molecules are not included.