8E40
Full-length APOBEC3G in complex with HIV-1 Vif, CBF-beta, and fork RNA
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA dC->dU-editing enzyme APOBEC-3G | polymer | 386 | 45187.4 | 1 | UniProt (Q7YR23) Pfam (PF18750) Pfam (PF18782) In PDB | Macaca mulatta (Rhesus monkey) | Deoxycytidine deaminase |
2 | B | Virion infectivity factor | polymer | 178 | 21136.4 | 1 | UniProt (B2CPZ0) Pfam (PF00559) UniProt (by SIFTS) (P12504) In PDB | Human immunodeficiency virus 1 | Vif,SOR protein |
3 | C | Core-binding factor subunit beta | polymer | 157 | 18643.8 | 1 | UniProt (Q13951) Pfam (PF02312) In PDB | Homo sapiens (human) | CBF-beta,Polyomavirus enhancer-binding protein 2 beta subunit,PEA2-beta,PEBP2-beta,SL3-3 enhancer factor 1 subunit beta,SL3/AKV core-binding factor beta subunit |
4 | R | RNA | polymer | 22 | 6875.0 | 1 | Escherichia coli | ||
5 | r | RNA | polymer | 25 | 8000.9 | 1 | Escherichia coli | ||
6 | A | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
A: 8 - 377 (UniProt: Q7YR23)
B: 1 - 177 (UniProt: B2CPZ0)
PDB | External Database | Details |
---|---|---|
Gly -6 | - | expression tag |
Pro -5 | - | expression tag |
Gly -4 | - | expression tag |
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
Gly -1 | - | expression tag |
Gly 0 | - | expression tag |
Met 1 | - | expression tag |
Lys 2 | - | expression tag |
Pro 3 | - | expression tag |
Gln 4 | - | expression tag |
Ile 5 | - | expression tag |
Arg 6 | - | expression tag |
Asn 7 | - | expression tag |
Asp 31 | Asn 24 | conflict |
Pro 60 | Ser 53 | conflict |
Asp 128 | Lys 121 | conflict |
- | Cys 132 | deletion |
- | Gln 133 | deletion |
- | Lys 134 | deletion |
- | Arg 135 | deletion |
Ala 139 | Gly 136 | conflict |
Glu 140 | Gly 137 | conflict |
Ala 141 | Pro 138 | conflict |
Gly 142 | His 139 | conflict |
Trp 175 | Arg 168 | conflict |
Gln 259 | Glu 252 | conflict |
Thr 326 | Ala 319 | conflict |
Leu 378 | - | expression tag |
Gln 379 | - | expression tag |
Asn 380 | - | expression tag |
Gln 381 | - | expression tag |
Gly 382 | - | expression tag |
Asn 383 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -1 | - | expression tag |
Pro 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 99843.5 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 130.8 | |
All* | Total formula weight | 99974.4 |