8DTI
Cryo-EM structure of Arabidopsis SPY in complex with GDP-fucose
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY | polymer | 946 | 105278.9 | 2 | UniProt (Q96301) Pfam (PF00515) Pfam (PF13844) | Arabidopsis thaliana (thale cress) | SPY, GDP-fucose protein O-fucosyltransferase SPINDLY |
| 2 | C, D (A, B) | GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE | non-polymer | 589.3 | 2 | Chemie (GFB) PubChem (135412609) PubChem (135432122) PubChem (135618130) PubChem (135820750) PubChem (135857542) PubChem (136771500) PubChem (137034801) PubChem (137286751) PubChem (154728870) PubChem (162951224) PubChem (171699380) PubChem (135398578) PubChem (135398655) PubChem (135398688) PubChem (135398715) PubChem (135402013) PubChem (135410864) PubChem (135442158) PubChem (135665286) PubChem (135815440) PubChem (135815442) PubChem (135829314) PubChem (136044550) PubChem (136153884) PubChem (136254584) PubChem (136597497) PubChem (136597502) PubChem (136649460) PubChem (136663939) PubChem (137105976) PubChem (137105977) PubChem (137105978) PubChem (137270783) PubChem (138454237) PubChem (169441079) PubChem (171439195) |
Sequence modifications
A, B: 1 - 914 (UniProt: Q96301)
| PDB | External Database | Details |
|---|---|---|
| Gly 915 | - | expression tag |
| Gly 916 | - | expression tag |
| Ser 917 | - | expression tag |
| Glu 918 | - | expression tag |
| Asn 919 | - | expression tag |
| Leu 920 | - | expression tag |
| Tyr 921 | - | expression tag |
| Phe 922 | - | expression tag |
| Gln 923 | - | expression tag |
| Gly 924 | - | expression tag |
| Gly 925 | - | expression tag |
| Ser 926 | - | expression tag |
| His 927 | - | expression tag |
| His 928 | - | expression tag |
| His 929 | - | expression tag |
| His 930 | - | expression tag |
| His 931 | - | expression tag |
| His 932 | - | expression tag |
| His 933 | - | expression tag |
| His 934 | - | expression tag |
| His 935 | - | expression tag |
| His 936 | - | expression tag |
| Gly 937 | - | expression tag |
| Gly 938 | - | expression tag |
| Trp 939 | - | expression tag |
| Ser 940 | - | expression tag |
| His 941 | - | expression tag |
| Pro 942 | - | expression tag |
| Gln 943 | - | expression tag |
| Phe 944 | - | expression tag |
| Glu 945 | - | expression tag |
| Lys 946 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 210557.7 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 1178.7 | |
| All* | Total formula weight | 211736.4 |
