8CRE
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1, AS | 25S | polymer | 3359 | 1085278.1 | 2 | GenBank (XR_002086444.1) | Candida albicans | |
2 | 3, AT | 5S | polymer | 121 | 38943.1 | 2 | GenBank (X16634.1) | Candida albicans | |
3 | 4, AU | 5.8S | polymer | 158 | 50683.9 | 2 | GenBank (OQ195134.1) | Candida albicans | |
4 | j, AW | 60S ribosomal protein L2-B | polymer | 254 | 27366.6 | 2 | UniProt (A0A8H6F1X9) In PDB | Candida albicans | |
5 | k, AX | 60S ribosomal protein L3 | polymer | 389 | 44040.8 | 2 | UniProt (Q59LS1) In PDB | Candida albicans | |
6 | l, AY | 60S ribosomal protein L4-B | polymer | 363 | 39282.4 | 2 | UniProt (A0A8H6F4H4) In PDB | Candida albicans | |
7 | m, AZ | Uncharacterized protein CaJ7.0206 | polymer | 298 | 34558.0 | 2 | UniProt (G1UAA6) In PDB | Candida albicans | |
8 | n, BA | 60S ribosomal protein L6 | polymer | 176 | 19798.0 | 2 | UniProt (Q9P834) In PDB | Candida albicans | |
9 | o, BB | 60S ribosomal protein L7-A | polymer | 241 | 27447.0 | 2 | UniProt (A0A8H6BVN2) In PDB | Candida albicans | |
10 | p, BC | 60S ribosomal protein L8 | polymer | 262 | 28549.4 | 2 | UniProt (A0A8H6C337) In PDB | Candida albicans | |
11 | q, BD | 60S ribosomal protein L9-B | polymer | 191 | 21755.2 | 2 | UniProt (A0A8H6C3N3) In PDB | Candida albicans | |
12 | r, BE | 60S ribosomal protein L10 | polymer | 220 | 25236.3 | 2 | UniProt (Q5AIB8) In PDB | Candida albicans | |
13 | s, BF | 60S ribosomal protein L11-B | polymer | 174 | 19859.8 | 2 | UniProt (A0A8H6F1S5) In PDB | Candida albicans | |
14 | t, BG | 60S ribosomal protein L13 | polymer | 202 | 23105.8 | 2 | UniProt (A0A8H6F5V7) In PDB | Candida albicans | |
15 | u, BH | 60S ribosomal protein L14-B | polymer | 131 | 14748.5 | 2 | UniProt (A0A8H6F332) In PDB | Candida albicans | |
16 | v, BI | 60S ribosomal protein L15-A | polymer | 204 | 24389.3 | 2 | UniProt (Q5A6R1) In PDB | Candida albicans | |
17 | w, BJ | Ribosomal protein L13 | polymer | 200 | 22685.8 | 2 | UniProt (A0A8H6BZ56) In PDB | Candida albicans | |
18 | x, BK | Ribosomal protein L22 | polymer | 185 | 21002.9 | 2 | UniProt (A0A8H6BUG0) In PDB | Candida albicans | |
19 | y, BL | 60S ribosomal protein L18-A | polymer | 186 | 20817.4 | 2 | UniProt (A0A8H6C4Y1) In PDB | Candida albicans | |
20 | z, BM | 60S ribosomal protein L19-A | polymer | 190 | 21942.8 | 2 | UniProt (A0A1D8PK40) In PDB | Candida albicans | |
21 | 0, BN | 60S ribosomal protein L20 | polymer | 172 | 20376.9 | 2 | UniProt (A0A8H6BZJ3) In PDB | Candida albicans | |
22 | 2, BO | 60S ribosomal protein L21-A | polymer | 160 | 18049.9 | 2 | UniProt (A0A8H6F1C8) In PDB | Candida albicans | |
23 | 5, BP | 60S ribosomal protein L22-B | polymer | 124 | 14107.9 | 2 | UniProt (A0A1D8PM41) In PDB | Candida albicans | |
24 | 6, BQ | 60S ribosomal protein L23-A | polymer | 137 | 14495.0 | 2 | UniProt (A0A8H6C444) In PDB | Candida albicans | |
25 | 7, BR | 60S ribosomal protein L24-A | polymer | 155 | 17430.3 | 2 | UniProt (A0A8H6C4U1) In PDB | Candida albicans | |
26 | 8, BS | 60S ribosomal protein L25 | polymer | 142 | 15873.6 | 2 | UniProt (A0A8H6F6A1) In PDB | Candida albicans | |
27 | 9, BT | Ribosomal protein L24 | polymer | 127 | 14215.5 | 2 | UniProt (A0A8H6F3X2) In PDB | Candida albicans | |
28 | AA, BU | 60S ribosomal protein L27 | polymer | 136 | 15551.4 | 2 | UniProt (Q9P843) In PDB | Candida albicans | |
29 | AB, BV | 60S ribosomal protein L28 | polymer | 149 | 16703.4 | 2 | UniProt (A0A8H6BVY8) In PDB | Candida albicans | |
30 | AC, BW | 60S ribosomal protein L29 | polymer | 63 | 7135.3 | 2 | UniProt (A0A8H6F0G8) In PDB | Candida albicans | |
31 | AD, BX | 60S ribosomal protein L30 | polymer | 106 | 11520.4 | 2 | UniProt (A0A1D8PM75) In PDB | Candida albicans | |
32 | AE, BY | 60S ribosomal protein L31-B | polymer | 112 | 12993.1 | 2 | UniProt (A0A8H6F1M1) In PDB | Candida albicans | |
33 | AF, BZ | 60S ribosomal protein L32 | polymer | 131 | 14993.7 | 2 | UniProt (O94008) In PDB | Candida albicans | |
34 | AG, CA | 60S ribosomal protein L33-A | polymer | 107 | 12138.2 | 2 | UniProt (A0A8H6BW57) In PDB | Candida albicans | |
35 | AH, CB | 60S ribosomal protein L34-B | polymer | 122 | 13774.3 | 2 | UniProt (A0A8H6F171) In PDB | Candida albicans | |
36 | AI, CC | Ribosomal protein L29 | polymer | 120 | 14118.8 | 2 | UniProt (A0A8H6F6B7) In PDB | Candida albicans | |
37 | AJ, CD | 60S ribosomal protein L36 | polymer | 99 | 11096.2 | 2 | UniProt (P47834) In PDB | Candida albicans | L39 |
38 | AK, CE | 60S ribosomal protein L37-B | polymer | 90 | 10102.8 | 2 | UniProt (A0A1D8PF45) In PDB | Candida albicans | |
39 | AL, CF | 60S ribosomal protein L38 | polymer | 78 | 8911.5 | 2 | UniProt (A0A1D8PG16) In PDB | Candida albicans | |
40 | AM, CG | 60S ribosomal protein L39 | polymer | 51 | 6347.5 | 2 | UniProt (Q96W55) In PDB | Candida albicans | L46 |
41 | AN, CH | 60S ribosomal protein L40-B | polymer | 52 | 6078.4 | 2 | UniProt (A0A1D8PL68) In PDB | Candida albicans | |
42 | AO, CI | 60S ribosomal protein L41 | polymer | 25 | 3396.3 | 2 | UniProt (P9WER7) In PDB | Candida albicans | |
43 | AP, CJ | 60S ribosomal protein L42-B | polymer | 106 | 12259.6 | 2 | UniProt (A0A8H6BR69) In PDB | Candida albicans | |
44 | AQ, CK | 60S ribosomal protein L43-A | polymer | 92 | 10136.8 | 2 | UniProt (A0A1D8PP14) In PDB | Candida albicans | |
45 | i, CL | 60S ribosomal protein CAALFM_C304810CA | polymer | 267 | 29126.1 | 2 | UniProt (A0A1D8PK71) In PDB | Candida albicans | |
46 | B, CM | 18S | polymer | 1787 | 575838.6 | 2 | GenBank (XR_002086442.1) | Candida albicans | |
47 | C, CN | 40S ribosomal protein S0 | polymer | 261 | 28759.3 | 2 | UniProt (A0A8H6C395) In PDB | Candida albicans | |
48 | D, CO | 40S ribosomal protein S1 | polymer | 256 | 29041.9 | 2 | UniProt (A0A8H6C387) In PDB | Candida albicans | |
49 | E, CP | Ribosomal protein S5 | polymer | 249 | 26917.3 | 2 | UniProt (A0A8H6BZ90) In PDB | Candida albicans | |
50 | F, CQ | Ribosomal protein S3 | polymer | 251 | 27313.6 | 2 | UniProt (A0A8H6BYS1) In PDB | Candida albicans | |
51 | G, CR | 40S ribosomal protein S4 | polymer | 262 | 29435.4 | 2 | UniProt (A0A1D8PCI6) In PDB | Candida albicans | |
52 | H, CS | Ribosomal protein S7 | polymer | 225 | 25319.9 | 2 | UniProt (A0A8H6BS29) In PDB | Candida albicans | |
53 | I, CT | 40S ribosomal protein S6 | polymer | 236 | 27146.5 | 2 | UniProt (A0A8H6BZ37) In PDB | Candida albicans | |
54 | J, CU | 40S ribosomal protein S7 | polymer | 186 | 21285.8 | 2 | UniProt (A0A8H6C655) In PDB | Candida albicans | |
55 | K, CV | 40S ribosomal protein S8 | polymer | 206 | 22802.0 | 2 | UniProt (A0A8H6F0S0) In PDB | Candida albicans | |
56 | L, CW | Ribosomal protein S4 | polymer | 189 | 21765.1 | 2 | UniProt (A0A8H6F1X2) In PDB | Candida albicans | |
57 | M, CX | 40S ribosomal protein S10-A | polymer | 118 | 13836.8 | 2 | UniProt (A0A8H6BWQ8) In PDB | Candida albicans | |
58 | N, CY | 40S ribosomal protein S11A | polymer | 155 | 17638.6 | 2 | UniProt (A0A1D8PN83) In PDB | Candida albicans | |
59 | O, CZ | 40S ribosomal protein S12 | polymer | 143 | 15715.9 | 2 | UniProt (A0A8H6C3A1) In PDB | Candida albicans | |
60 | P, DA | 40S ribosomal protein S13 | polymer | 151 | 16976.8 | 2 | UniProt (A0A8H6F4G0) In PDB | Candida albicans | |
61 | Q, DB | 40S ribosomal protein S14-A | polymer | 132 | 14052.1 | 2 | UniProt (A0A8H6F0V4) In PDB | Candida albicans | |
62 | R, DC | 40S ribosomal protein S15 | polymer | 142 | 15967.8 | 2 | UniProt (A0A1D8PK22) In PDB | Candida albicans | |
63 | S, DD | 40S ribosomal protein S16 | polymer | 142 | 15769.5 | 2 | UniProt (O94017) In PDB | Candida albicans | |
64 | T, DE | 40S ribosomal protein S17-B | polymer | 137 | 15770.3 | 2 | UniProt (A0A8H6BTR7) In PDB | Candida albicans | |
65 | U, DF | 40S ribosomal protein S18-B | polymer | 145 | 17023.8 | 2 | UniProt (A0A8H6F3Y8) In PDB | Candida albicans | |
66 | V, DG | 40S ribosomal protein S19-A | polymer | 145 | 16097.2 | 2 | UniProt (A0A8H6C5L4) In PDB | Candida albicans | |
67 | W, DH | Ribosomal protein S10 | polymer | 119 | 13366.5 | 2 | UniProt (A0A8H6BYJ9) In PDB | Candida albicans | |
68 | X, DI | 40S ribosomal protein S21 | polymer | 87 | 9652.8 | 2 | UniProt (Q9P844) In PDB | Candida albicans | |
69 | Y, DJ | 40S ribosomal protein S22-A | polymer | 130 | 14807.2 | 2 | UniProt (A0A8H6F0N4) In PDB | Candida albicans | |
70 | Z, DK | Ribosomal protein S23 (S12) | polymer | 145 | 16000.8 | 2 | UniProt (A0A8H6F0V0) In PDB | Candida albicans | |
71 | a, DL | 40S ribosomal protein S24 | polymer | 135 | 15546.9 | 2 | UniProt (A0A8H6C3K1) In PDB | Candida albicans | |
72 | b, DM | 40S ribosomal protein S25 | polymer | 105 | 11633.8 | 2 | UniProt (A0A8H6EZQ8) In PDB | Candida albicans | |
73 | c, DN | 40S ribosomal protein S26 | polymer | 119 | 13606.1 | 2 | UniProt (A0A8H6BTS1) In PDB | Candida albicans | |
74 | d, DO | 40S ribosomal protein S27 | polymer | 82 | 8982.5 | 2 | UniProt (A0A8H6BWE6) In PDB | Candida albicans | |
75 | e, DP | 40S ribosomal protein S28-B | polymer | 67 | 7536.8 | 2 | UniProt (A0A8H6C0A5) In PDB | Candida albicans | |
76 | f, DQ | 40S ribosomal protein S29A | polymer | 56 | 6615.6 | 2 | UniProt (A0A1D8PTR4) In PDB | Candida albicans | |
77 | g, DR | 40S ribosomal protein S30 | polymer | 63 | 7127.4 | 2 | UniProt (A0A1D8PSK2) In PDB | Candida albicans | |
78 | h, DS | Ubiquitin-40S ribosomal protein S31 fusion protein | polymer | 193 | 22615.5 | 2 | UniProt (Q5A109) In PDB | Candida albicans | |
79 | AR, DT | Guanine nucleotide-binding protein subunit beta-like protein | polymer | 317 | 34593.9 | 2 | UniProt (A0A8H6C3E7) In PDB | Candida albicans | |
80 | P0, p0 | 60S acidic ribosomal protein P0 | polymer | 312 | 33302.6 | 2 | UniProt (G1UA71) In PDB | Candida albicans | |
81 | 12 | 60S ribosomal protein L12-A | polymer | 165 | 17791.5 | 1 | UniProt (A0A8H6C5X8) In PDB | Candida albicans | |
82 | L1, l1 | Ribosomal protein | polymer | 217 | 24416.7 | 2 | UniProt (A0A8H6F4E7) In PDB | Candida albicans | |
83 | 3, CM, o, 6, B... | MAGNESIUM ION | non-polymer | 24.3 | 1210 | Chemie (MG) | |||
84 | 1, AS | 3-O-acetyl-2-O-(3-O-acetyl-6-deoxy-beta-D-glucopyranosyl)-6-deoxy-1-O-{[(2R,2'S,3a'R,4''S,5''R,6'S,7a'S)-5''-methyl-4''-{[(2E)-3-phenylprop-2-enoyl]oxy}decahydrodispiro[oxirane-2,3'-[1]benzofuran-2',2''-pyran]-6'-yl]carbonyl}-beta-D-glucopyranose | non-polymer | 804.8 | 2 | Chemie (3K5) | |||
85 | AQ, DN, DO, DQ, DS... | ZINC ION | non-polymer | 65.4 | 18 | Chemie (ZN) | |||
86 | B, CM | GENETICIN | non-polymer | 496.6 | 2 | Chemie (GET) | |||
87 | water | water | 18.0 | 30 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 163 |
Total formula weight | 6371198.5 | |
Non-Polymers* | Number of molecules | 1232 |
Total formula weight | 33189.2 | |
All* | Total formula weight | 6404387.7 |