8AS0
PD-1 extracellular domain in complex with Fab fragment from D12 antibody
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | C, D, G, J, M... | D12 antibody light chain, Fab fragment | polymer | 214 | 23343.9 | 8 | Homo sapiens | ||
2 | B, E, H, K, N... | D12 antibody heavy chain, Fab fragment | polymer | 225 | 23792.6 | 8 | Homo sapiens | ||
3 | A, F, I, L, O... | Programmed cell death protein 1 | polymer | 168 | 19073.2 | 8 | UniProt (Q15116) Pfam (PF07686) In PDB | Homo sapiens (human) | Protein PD-1,hPD-1 |
4 | U | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
5 | g, h, k, Z | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 4 | In PDB GlyTouCan (G32152BH) | |||
6 | a, e, j | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 3 | In PDB GlyTouCan (G21290RB) | |||
7 | b | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
8 | c | beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 1 | In PDB GlyTouCan (G27425HP) | |||
9 | d, i | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 2 | In PDB GlyTouCan (G86851RC) | |||
10 | f | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 1 | In PDB | |||
11 | F, I, L, O, R... | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 8 | Chemie (NAG) |
Sequence modifications
A, F, I, L, O, R, X, Y: 24 - 170 (UniProt: Q15116)
PDB | External Database | Details |
---|---|---|
Gly 171 | - | expression tag |
Leu 172 | - | expression tag |
Asn 173 | - | expression tag |
Asp 174 | - | expression tag |
Ile 175 | - | expression tag |
Phe 176 | - | expression tag |
Glu 177 | - | expression tag |
Ala 178 | - | expression tag |
Gln 179 | - | expression tag |
Lys 180 | - | expression tag |
Ile 181 | - | expression tag |
Glu 182 | - | expression tag |
Trp 183 | - | expression tag |
His 184 | - | expression tag |
Glu 185 | - | expression tag |
His 186 | - | expression tag |
His 187 | - | expression tag |
His 188 | - | expression tag |
His 189 | - | expression tag |
His 190 | - | expression tag |
His 191 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 24 |
Total formula weight | 529677.3 | |
Branched | Number of molecules | 13 |
Total formula weight | 8339.8 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 1769.7 | |
All* | Total formula weight | 539786.7 |