7ZXU
SARS-CoV-2 Omicron BA.4/5 RBD in complex with Beta-27 Fab and C1 nanobody
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | E | Spike protein S1 | polymer | 202 | 22996.9 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
2 | A | Nanobody C1 | polymer | 131 | 14659.1 | 1 | Lama glama | ||
3 | H | Beta-27 heavy chain | polymer | 222 | 23532.5 | 1 | Homo sapiens | ||
4 | L | Beta-27 light chain | polymer | 214 | 23129.5 | 1 | Homo sapiens | ||
5 | E, A, H, L | GLYCEROL | non-polymer | 92.1 | 10 | Chemie (GOL) | |||
6 | E, A, H, L | ISOPROPYL ALCOHOL | non-polymer | 60.1 | 6 | Chemie (IPA) | |||
7 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
8 | L | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 1 | Chemie (PG4) | |||
9 | water | water | 18.0 | 577 | Chemie (HOH) |
Sequence modifications
E: 333 - 528 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
His 327 | - | expression tag |
His 328 | - | expression tag |
His 329 | - | expression tag |
His 330 | - | expression tag |
His 331 | - | expression tag |
His 332 | - | expression tag |
Asp 339 | Gly 339 | variant |
Phe 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Ala 376 | Thr 376 | variant |
Asn 405 | Asp 405 | variant |
Ser 408 | Arg 408 | variant |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Arg 452 | Leu 452 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Val 486 | Phe 486 | conflict |
Arg 498 | Gln 498 | variant |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Lys 527 | Pro 527 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 84318.1 | |
Non-Polymers* | Number of molecules | 18 |
Total formula weight | 1696.9 | |
All* | Total formula weight | 86015.0 |