7YBM

SARS-CoV-2 C.1.2 variant spike (Close state)

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C (A, B, C)	Spike glycoprotein	polymer	1271	141172.4	3	UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601)	Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2)
2	BA, D, EA, F, I... (b, D, e, F, I...)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	9	In PDB GlyTouCan (G42666HT)
3	AA, CA, DA, E, FA... (a, c, d, E, f...)	alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		586.5	21	In PDB GlyTouCan (G62182OO)
4	HA, L, W (h, L, W)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	branched		570.5	3	In PDB GlyTouCan (G21290RB)
5	AB, BB, CB, DB, EB... (C, A, B)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	24	Chemie (NAG)

Sequence modifications

A, B, C: 1 - 1273 (UniProt: P0DTC2)

PDB	External Database	Details
Phe 18	Leu 18	variant
Phe 136	Cys 136	conflict
Ser 190	Arg 190	variant
Gly 215	Asp 215	variant
-	Leu 242	deletion
-	Ala 243	deletion
His 449	Tyr 449	conflict
Lys 484	Glu 484	variant
Tyr 501	Asn 501	variant
Gly 614	Asp 614	variant
Tyr 655	His 655	variant
Lys 679	Asn 679	variant
Ile 716	Thr 716	variant
Asn 859	Thr 859	variant
Pro 892	Ala 892	variant
Pro 899	Ala 899	variant
Pro 942	Ala 942	conflict

Contents of the asymmetric unit

Polymers	Number of chains	3
	Total formula weight	423517.3
Branched	Number of molecules	33
	Total formula weight	17848.6
Non-Polymers*	Number of molecules	24
	Total formula weight	5309.0
All*	Total formula weight	446674.9

*Water molecules are not included.