7VPP
Structures of a deltacoronavirus spike protein bound to porcine and human receptors indicate the risk of virus adaptation to humans
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C | Aminopeptidase | polymer | 911 | 103803.6 | 2 | UniProt (K7GMF9) Pfam (PF17900) Pfam (PF01433) Pfam (PF11838) UniProt (by SIFTS) (P15145) In PDB | Sus scrofa (Pig) | |
2 | B | Spike protein | polymer | 127 | 14326.2 | 1 | UniProt (A0A4P8D758) Pfam (PF01600) In PDB | Porcine deltacoronavirus | |
3 | D, E, F, G, H... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 9 | In PDB GlyTouCan (G42666HT) | |||
4 | L | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G79924RM) | |||
5 | A, C | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
6 | A, C | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
7 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) | |||
8 | water | water | 18.0 | 35 | Chemie (HOH) |
Sequence modifications
A, C: 58 - 961 (UniProt: K7GMF9)
B: 300 - 419 (UniProt: A0A4P8D758)
PDB | External Database | Details |
---|---|---|
Gly 962 | - | expression tag |
His 963 | - | expression tag |
His 964 | - | expression tag |
His 965 | - | expression tag |
His 966 | - | expression tag |
His 967 | - | expression tag |
His 968 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly 420 | - | expression tag |
His 421 | - | expression tag |
His 422 | - | expression tag |
His 423 | - | expression tag |
His 424 | - | expression tag |
His 425 | - | expression tag |
His 426 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 221933.3 | |
Branched | Number of molecules | 10 |
Total formula weight | 4244.0 | |
Non-Polymers* | Number of molecules | 12 |
Total formula weight | 1697.3 | |
All* | Total formula weight | 227874.6 |