7PO6
Xist (m6A)UCG tetraloop RNA bound to the YTH domain of YTHDC1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | D, E, F | RNA (5'-R(*(6MZ)P*UP*C)-3') | polymer | 14 | 4506.8 | 3 | Homo sapiens | ||
| 2 | B, A, C | Isoform 2 of YTH domain-containing protein 1 | polymer | 169 | 18995.0 | 3 | UniProt (Q96MU7) Pfam (PF04146) In PDB | Homo sapiens (human) | Splicing factor YT521,YT521-B |
| 3 | D | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
| 4 | B, A, C | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
| 5 | B, A, C | SULFATE ION | non-polymer | 96.1 | 7 | Chemie (SO4) | |||
| 6 | C | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 7 | water | water | 18.0 | 192 | Chemie (HOH) |
Sequence modifications
B, A, C: 345 - 509 (UniProt: Q96MU7)
| PDB | External Database | Details |
|---|---|---|
| Gly 341 | - | expression tag |
| Gly 342 | - | expression tag |
| Gly 343 | - | expression tag |
| Gly 344 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 70505.2 | |
| Non-Polymers* | Number of molecules | 16 |
| Total formula weight | 1653.1 | |
| All* | Total formula weight | 72158.3 |
