7P47
Structure of the E3 ligase Smc5/Nse2 in complex with Ubc9-SUMO thioester mimetic
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | B | Structural maintenance of chromosomes protein 5 | polymer | 84 | 9978.6 | 1 | UniProt (Q08204) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
2 | C | SUMO-conjugating enzyme UBC9 | polymer | 165 | 19071.6 | 1 | UniProt (P50623) Pfam (PF00179) In PDB | Saccharomyces cerevisiae (Baker's yeast) | RING-type E3 SUMO transferase UBC9,Ubiquitin carrier protein 9,Ubiquitin-conjugating enzyme E2-18 kDa,Ubiquitin-protein ligase |
3 | A | E3 SUMO-protein ligase MMS21 | polymer | 214 | 24117.1 | 1 | UniProt (P38632) Pfam (PF22326) Pfam (PF11789) In PDB | Saccharomyces cerevisiae (Baker's yeast) | E3 SUMO-protein transferase MMS21,Methyl methanesulfonate-sensitivity protein 21,Non-structural maintenance of chromosome element 2,Non-SMC element 2 |
4 | E, D | Ubiquitin-like protein SMT3 | polymer | 121 | 13739.4 | 2 | UniProt (Q12306) Pfam (PF00240) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
5 | A | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
B: 737 - 777 (UniProt: Q08204)
C: 1 - 157 (UniProt: P50623)
A: 27 - 267 (UniProt: P38632)
E, D: 1 - 98 (UniProt: Q12306)
PDB | External Database | Details |
---|---|---|
Met 326 | - | initiating methionine |
Gly 327 | - | expression tag |
Thr 328 | - | expression tag |
Asp 329 | - | expression tag |
Glu 330 | - | expression tag |
Phe 331 | - | expression tag |
Leu 332 | - | expression tag |
Lys 333 | - | expression tag |
Ala 334 | - | expression tag |
Lys 335 | - | expression tag |
Glu 336 | - | expression tag |
Lys 337 | - | expression tag |
Ile 338 | - | expression tag |
Asn 339 | - | expression tag |
Glu 340 | - | expression tag |
Ile 341 | - | expression tag |
Phe 342 | - | expression tag |
Glu 343 | - | expression tag |
Lys 344 | - | expression tag |
Leu 345 | - | expression tag |
Asn 346 | - | expression tag |
Thr 347 | - | expression tag |
Ile 348 | - | expression tag |
Arg 349 | - | expression tag |
Asp 350 | - | expression tag |
Glu 351 | - | expression tag |
Val 352 | - | expression tag |
Ile 353 | - | expression tag |
Lys 354 | - | expression tag |
Lys 355 | - | expression tag |
Lys 356 | - | expression tag |
Asn 357 | - | expression tag |
Gln 358 | - | expression tag |
Asn 359 | - | expression tag |
Glu 360 | - | expression tag |
Tyr 361 | - | expression tag |
Tyr 362 | - | expression tag |
Arg 363 | - | expression tag |
Gly 732 | - | expression tag |
Arg 733 | - | expression tag |
Thr 734 | - | expression tag |
Gly 735 | - | expression tag |
Thr 736 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Lys 129 | Ala 129 | engineered mutation |
Arg 153 | Lys 153 | engineered mutation |
Gly 158 | - | expression tag |
Tyr 159 | - | expression tag |
His 160 | - | expression tag |
His 161 | - | expression tag |
His 162 | - | expression tag |
His 163 | - | expression tag |
His 164 | - | expression tag |
His 165 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met 4 | - | initiating methionine |
Gly 5 | - | expression tag |
Ser 6 | - | expression tag |
Ser 7 | - | expression tag |
His 8 | - | expression tag |
His 9 | - | expression tag |
His 10 | - | expression tag |
His 11 | - | expression tag |
His 12 | - | expression tag |
His 13 | - | expression tag |
Ser 14 | - | expression tag |
Ser 15 | - | expression tag |
Gly 16 | - | expression tag |
Leu 17 | - | expression tag |
Val 18 | - | expression tag |
Pro 19 | - | expression tag |
Arg 20 | - | expression tag |
Gly 21 | - | expression tag |
Ser 22 | - | expression tag |
His 23 | - | expression tag |
Met 24 | - | expression tag |
Leu 25 | - | expression tag |
Glu 26 | - | expression tag |
- | Phe 83 | deletion |
- | Asp 84 | deletion |
- | Glu 85 | deletion |
- | His 86 | deletion |
- | Ile 87 | deletion |
- | Lys 88 | deletion |
- | Asp 89 | deletion |
- | Leu 90 | deletion |
- | Lys 91 | deletion |
- | Lys 92 | deletion |
- | Asn 93 | deletion |
- | Phe 94 | deletion |
- | Lys 95 | deletion |
- | Gln 96 | deletion |
- | Ser 97 | deletion |
- | Ser 98 | deletion |
- | Asp 99 | deletion |
- | Ala 100 | deletion |
- | Cys 101 | deletion |
- | Pro 102 | deletion |
- | Gln 103 | deletion |
- | Ile 104 | deletion |
- | Asp 105 | deletion |
- | Leu 106 | deletion |
- | Ser 107 | deletion |
- | Thr 108 | deletion |
- | Trp 109 | deletion |
- | Asp 110 | deletion |
- | Lys 111 | deletion |
- | Tyr 112 | deletion |
- | Arg 113 | deletion |
- | Thr 114 | deletion |
- | Gly 115 | deletion |
- | Glu 116 | deletion |
- | Leu 117 | deletion |
- | Thr 118 | deletion |
- | Ala 119 | deletion |
- | Pro 120 | deletion |
- | Lys 121 | deletion |
- | Leu 122 | deletion |
- | Ser 123 | deletion |
- | Glu 124 | deletion |
- | Leu 125 | deletion |
- | Tyr 126 | deletion |
- | Leu 127 | deletion |
- | Asn 128 | deletion |
- | Met 129 | deletion |
- | Pro 130 | deletion |
- | Thr 131 | deletion |
- | Pro 132 | deletion |
Gly 133 | Glu 133 | conflict |
Thr 134 | Pro 134 | conflict |
PDB | External Database | Details |
---|---|---|
Met -22 | - | initiating methionine |
Gly -21 | - | expression tag |
Ser -20 | - | expression tag |
Ser -19 | - | expression tag |
His -18 | - | expression tag |
His -17 | - | expression tag |
His -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
Ser -12 | - | expression tag |
Ser -11 | - | expression tag |
Gly -10 | - | expression tag |
Leu -9 | - | expression tag |
Val -8 | - | expression tag |
Pro -7 | - | expression tag |
Arg -6 | - | expression tag |
Gly -5 | - | expression tag |
Ser -4 | - | expression tag |
His -3 | - | expression tag |
Met -2 | - | expression tag |
Ala -1 | - | expression tag |
Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 80646.2 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 65.4 | |
All* | Total formula weight | 80711.6 |