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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7NHL

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
10Lincosamide-streptogramin A resistance proteinpolymer54663265.31UniProt (A0SNL9)
Pfam (PF00005)
Pfam (PF12848)
In PDB		Staphylococcus haemolyticus
2DP-tRNA fMetpolymer7624506.61Staphylococcus aureus subsp. aureus NCTC 8325
3Z50S ribosomal protein L27polymer9410334.81UniProt (Q2FXT0)
Pfam (PF01016)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
4P50S ribosomal protein L16polymer14416274.01UniProt (Q2FW13)
Pfam (PF00252)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
5A23S rRNApolymer2923946696.71GenBank (87201381)Staphylococcus aureus subsp. aureus NCTC 8325
6a16S rRNApolymer1551501711.21GenBank (CP000253.1)Staphylococcus aureus subsp. aureus NCTC 8325
7B5S rRNApolymer11536974.91GenBank (CP000253.1)Staphylococcus aureus subsp. aureus NCTC 8325
8G50S ribosomal protein L2polymer27730217.21UniProt (P60430)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
9H50S ribosomal protein L3polymer22023760.31UniProt (Q2FW06)
Pfam (PF00297)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
10I50S ribosomal protein L4polymer20722495.71UniProt (Q2FW07)
Pfam (PF00573)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
11J50S ribosomal protein L5polymer17920296.61UniProt (Q2FW18)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
12K50S ribosomal protein L6polymer17819818.61UniProt (Q2FW21)
Pfam (PF00347)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
13M50S ribosomal protein L13polymer14516359.41UniProt (Q2FW38)
Pfam (PF00572)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
14N50S ribosomal protein L14polymer12213157.31UniProt (Q2FW16)
Pfam (PF00238)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
15O50S ribosomal protein L15polymer14615628.91UniProt (P0A0F8)
Pfam (PF00828)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
16Q50S ribosomal protein L17polymer12213771.81UniProt (Q2FW33)
Pfam (PF01196)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
17R50S ribosomal protein L18polymer11913124.11UniProt (Q2FW22)
Pfam (PF00861)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
18S50S ribosomal protein L19polymer11613392.81UniProt (Q2FZ42)
Pfam (PF01245)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
19T50S ribosomal protein L20polymer11813720.31UniProt (Q2FXQ1)
Pfam (PF00453)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
20U50S ribosomal protein L21polymer10211354.11UniProt (Q2FXS8)
Pfam (PF00829)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
21V50S ribosomal protein L22polymer11712857.91UniProt (Q2FW11)
Pfam (PF00237)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
22W50S ribosomal protein L23polymer9110625.41UniProt (Q2FW08)
Pfam (PF00276)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
23X50S ribosomal protein L24polymer10511561.51UniProt (Q2FW17)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
24Y50S ribosomal protein L25polymer21723810.61UniProt (Q2G0S0)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325General stress protein CTC
25150S ribosomal protein L28polymer626995.31UniProt (Q2FZ60)
Pfam (PF00830)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
26250S ribosomal protein L29polymer698105.31UniProt (Q2FW14)
Pfam (PF00831)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
27350S ribosomal protein L30polymer596565.71UniProt (P0A0G2)
Pfam (PF00327)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
28650S ribosomal protein L33 2polymer495885.81UniProt (Q2FY22)
Pfam (PF00471)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
29850S ribosomal protein L35polymer667722.41UniProt (Q2FXQ0)
Pfam (PF01632)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
30750S ribosomal protein L34polymer455454.61UniProt (Q2FUQ0)
Pfam (PF00468)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
31d30S ribosomal protein S3polymer21724143.91UniProt (Q2FW12)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
32e30S ribosomal protein S4polymer20023051.41UniProt (Q2FXK6)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
33h30S ribosomal protein S7polymer15617826.61UniProt (P48940)
Pfam (PF00177)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
34k30S ribosomal protein S10polymer10211598.51UniProt (A0A0D1JTN2)
Pfam (PF00338)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
35l30S ribosomal protein S11polymer12913908.01UniProt (Q2FW31)
Pfam (PF00411)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
36o30S ribosomal protein S14 type Zpolymer607246.71UniProt (Q2FW19)
Pfam (PF00253)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
37p30S ribosomal protein S15polymer8910634.31UniProt (Q2G2Q1)
Pfam (PF00312)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
38q30S ribosomal protein S16polymer9110253.91UniProt (Q2FZ45)
Pfam (PF00886)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
39u30S ribosomal protein S20polymer839039.51UniProt (Q2FXY6)
Pfam (PF01649)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
40950S ribosomal protein L36polymer374318.41UniProt (Q2FW29)
Pfam (PF00444)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
41t30S ribosomal protein S19polymer9210639.31UniProt (Q2FW10)
Pfam (PF00203)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
42n30S ribosomal protein S13polymer12113747.91UniProt (Q2FW30)
Pfam (PF00416)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
43j30S ribosomal protein S9polymer13214857.01UniProt (Q2FW39)
Pfam (PF00380)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
44f30S ribosomal protein S5polymer16617770.51UniProt (Q2FW23)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
45i30S ribosomal protein S8polymer13214854.31UniProt (Q2FW20)
Pfam (PF00410)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
46s30S ribosomal protein S18polymer809332.01UniProt (Q2G111)
Pfam (PF01084)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
47g30S ribosomal protein S6polymer9811613.11UniProt (Q2G113)
Pfam (PF01250)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
48bRNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3')polymer154128.41Staphylococcus aureus subsp. aureus NCTC 8325
49m30S ribosomal protein S12polymer13715320.91UniProt (P0A0H0)
Pfam (PF00164)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
50r30S ribosomal protein S17polymer8710196.91UniProt (Q2FW15)
Pfam (PF00366)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
51c30S ribosomal protein S2polymer25529136.41UniProt (Q2FZ25)
Pfam (PF00318)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
52450S ribosomal protein L31 type Bpolymer849737.91UniProt (Q2FWD8)
Pfam (PF01197)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
53550S ribosomal protein L32polymer576500.61UniProt (A0A0D1H2J5)
Pfam (PF01783)
In PDB		Staphylococcus aureus subsp. aureus NCTC 8325
54A, a, 0, G, OMAGNESIUM IONnon-polymer24.3138Chemie (MG)
550ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.22Chemie (ATP)
56A, P, aPOTASSIUM IONnon-polymer39.118Chemie (K)
576, o, 9, 5ZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
0: 1 - 522 (UniProt: A0SNL9)
PDBExternal DatabaseDetails
Gln 105Glu 105engineered mutation
Gln 410Glu 410engineered mutation
Gly 523-expression tag
Gly 524-expression tag
Asp 525-expression tag
Tyr 526-expression tag
Lys 527-expression tag
Asp 528-expression tag
His 529-expression tag
Asp 530-expression tag
Gly 531-expression tag
Asp 532-expression tag
Tyr 533-expression tag
Lys 534-expression tag
Asp 535-expression tag
His 536-expression tag
Asp 537-expression tag
Ile 538-expression tag
Asp 539-expression tag
Tyr 540-expression tag
Lys 541-expression tag
Asp 542-expression tag
Asp 543-expression tag
Asp 544-expression tag
Asp 545-expression tag
Lys 546-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains53
Total formula weight2226301.4
Non-Polymers*Number of molecules162
Total formula weight5333.9
All*Total formula weight2231635.2
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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