7BWT

SopD-Rab8 complex structure

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	SPI-1 type III secretion system effector SopD	polymer	336	38228.4	1	UniProt (A0A5K1V7S2) Pfam (PF11047) UniProt (by SIFTS) (P40722) In PDB	Salmonella typhimurium	Secreted protein in the Sop family transferred to eukaryotic cells
2	B	Ras-related protein Rab-8A	polymer	182	20875.9	1	UniProt (P61006) Pfam (PF00071) In PDB	Homo sapiens (Human)	Oncogene c-mel
3	A	DI(HYDROXYETHYL)ETHER	non-polymer		106.1	2	Chemie (PEG)
4	A, B	GLYCEROL	non-polymer		92.1	9	Chemie (GOL)
5	B	GUANOSINE-5'-DIPHOSPHATE	non-polymer		443.2	1	Chemie (GDP)
6	B	MAGNESIUM ION	non-polymer		24.3	1	Chemie (MG)
7		water	water		18.0	120	Chemie (HOH)

Sequence modifications

A: 2 - 317 (UniProt: A0A5K1V7S2)

PDB	External Database	Details
Met -18	-	initiating methionine
Gly -17	-	expression tag
Ser -16	-	expression tag
Ser -15	-	expression tag
His -14	-	expression tag
His -13	-	expression tag
His -12	-	expression tag
His -11	-	expression tag
His -10	-	expression tag
His -9	-	expression tag
Ser -8	-	expression tag
Ser -7	-	expression tag
Gly -6	-	expression tag
Leu -5	-	expression tag
Val -4	-	expression tag
Pro -3	-	expression tag
Arg -2	-	expression tag
Gly -1	-	expression tag
Ser 0	-	expression tag
His 1	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	59104.3
Non-Polymers*	Number of molecules	13
	Total formula weight	1508.6
All*	Total formula weight	60612.9

*Water molecules are not included.