7BWT
SopD-Rab8 complex structure
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | SPI-1 type III secretion system effector SopD | polymer | 336 | 38228.4 | 1 | UniProt (A0A5K1V7S2) Pfam (PF11047) UniProt (by SIFTS) (P40722) | Salmonella typhimurium | Secreted protein in the Sop family transferred to eukaryotic cells |
| 2 | B (B) | Ras-related protein Rab-8A | polymer | 182 | 20875.9 | 1 | UniProt (P61006) Pfam (PF00071) | Homo sapiens (Human) | Oncogene c-mel |
| 3 | C, D (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) PubChem (8117) | |||
| 4 | E, F, G, H, I... (A, B) | GLYCEROL | non-polymer | 92.1 | 9 | Chemie (GOL) PubChem (753) | |||
| 5 | J (B) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) | |||
| 6 | K (B) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) PubChem (888) | |||
| 7 | P, Q (A, B) | water | water | 18.0 | 120 | Chemie (HOH) |
Sequence modifications
A: 2 - 317 (UniProt: A0A5K1V7S2)
| PDB | External Database | Details |
|---|---|---|
| Met -18 | - | initiating methionine |
| Gly -17 | - | expression tag |
| Ser -16 | - | expression tag |
| Ser -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Ser -7 | - | expression tag |
| Gly -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Val -4 | - | expression tag |
| Pro -3 | - | expression tag |
| Arg -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Ser 0 | - | expression tag |
| His 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 59104.3 | |
| Non-Polymers* | Number of molecules | 13 |
| Total formula weight | 1508.6 | |
| All* | Total formula weight | 60612.9 |
