7BWT
SopD-Rab8 complex structure
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | SPI-1 type III secretion system effector SopD | polymer | 336 | 38228.4 | 1 | UniProt (A0A5K1V7S2) Pfam (PF11047) UniProt (by SIFTS) (P40722) | Salmonella typhimurium | Secreted protein in the Sop family transferred to eukaryotic cells |
| 2 | B (B) | Ras-related protein Rab-8A | polymer | 182 | 20875.9 | 1 | UniProt (P61006) Pfam (PF00071) | Homo sapiens (Human) | Oncogene c-mel |
| 3 | C, D (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) | |||
| 4 | E, F, G, H, I... (A, B) | GLYCEROL | non-polymer | 92.1 | 9 | Chemie (GOL) | |||
| 5 | J (B) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 6 | K (B) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 7 | P, Q (A, B) | water | water | 18.0 | 120 | Chemie (HOH) |
Sequence modifications
A: 2 - 317 (UniProt: A0A5K1V7S2)
| PDB | External Database | Details |
|---|---|---|
| Met -18 | - | initiating methionine |
| Gly -17 | - | expression tag |
| Ser -16 | - | expression tag |
| Ser -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Ser -7 | - | expression tag |
| Gly -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Val -4 | - | expression tag |
| Pro -3 | - | expression tag |
| Arg -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Ser 0 | - | expression tag |
| His 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 59104.3 | |
| Non-Polymers* | Number of molecules | 13 |
| Total formula weight | 1508.6 | |
| All* | Total formula weight | 60612.9 |
