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7BWT

SopD-Rab8 complex structure

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0016020cellular_componentmembrane
A0020002cellular_componenthost cell plasma membrane
A0030254biological_processprotein secretion by the type III secretion system
A0030430cellular_componenthost cell cytoplasm
A0033644cellular_componenthost cell membrane
A0044164cellular_componenthost cell cytosol
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue PEG A 401
ChainResidue
AGLU143
ASER244
AMET245
ATYR278
AHIS282
AHOH528
BALA76
BARG79

site_idAC2
Number of Residues3
Detailsbinding site for residue PEG A 402
ChainResidue
BARG27
BLYS153
AHOH560

site_idAC3
Number of Residues4
Detailsbinding site for residue GOL A 403
ChainResidue
ASER213
AGLY221
AASN222
APHE223

site_idAC4
Number of Residues3
Detailsbinding site for residue GOL A 404
ChainResidue
ALYS85
AILE101
AGLU152

site_idAC5
Number of Residues7
Detailsbinding site for residue GOL A 405
ChainResidue
ASER140
AGLU142
AGLU143
AMET189
AMET190
ASER244
AGOL406

site_idAC6
Number of Residues4
Detailsbinding site for residue GOL A 406
ChainResidue
AGLU142
AGLU188
AMET189
AGOL405

site_idAC7
Number of Residues2
Detailsbinding site for residue GOL A 407
ChainResidue
AGLU67
AHOH525

site_idAC8
Number of Residues21
Detailsbinding site for residue GDP B 201
ChainResidue
BASP16
BSER17
BGLY18
BVAL19
BGLY20
BLYS21
BTHR22
BCYS23
BPHE33
BASN121
BLYS122
BASP124
BVAL125
BSER151
BALA152
BLYS153
BMG202
BHOH305
BHOH307
BHOH309
BHOH318

site_idAC9
Number of Residues6
Detailsbinding site for residue MG B 202
ChainResidue
BTHR22
BGDP201
BHOH305
BHOH307
BHOH309
BHOH319

site_idAD1
Number of Residues8
Detailsbinding site for residue GOL B 203
ChainResidue
BARG27
BPHE28
BASP31
BARG48
BASN155
BVAL158
BGLU159
BGOL206

site_idAD2
Number of Residues4
Detailsbinding site for residue GOL B 204
ChainResidue
BLYS10
BTRP62
BTHR64
BTYR77

site_idAD3
Number of Residues6
Detailsbinding site for residue GOL B 205
ChainResidue
AGLU240
BTHR4
BSER29
BGLU30
BILE47
BHOH315

site_idAD4
Number of Residues4
Detailsbinding site for residue GOL B 206
ChainResidue
BLYS3
BSER29
BARG48
BGOL203

Functional Information from PROSITE/UniProt
site_idPS00675
Number of Residues14
DetailsSIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. LLLiGDSGVGKtcV
ChainResidueDetails
BLEU11-VAL24

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues14
DetailsMotif: {"description":"Switch 1","evidences":[{"source":"UniProtKB","id":"P62820","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues17
DetailsMotif: {"description":"Switch 2","evidences":[{"source":"UniProtKB","id":"P62820","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues10
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"21378754","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"27552051","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"3QBT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5SZI","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"27552051","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"5SZI","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"21378754","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27552051","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3QBT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5SZI","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"21378754","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"3QBT","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"21378754","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3QBT","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine; by LRRK2","evidences":[{"source":"PubMed","id":"26824392","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29125462","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30209220","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30398148","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

239149

PDB entries from 2025-07-23

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