7BWT
SopD-Rab8 complex structure
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005515 | molecular_function | protein binding |
A | 0005576 | cellular_component | extracellular region |
A | 0016020 | cellular_component | membrane |
A | 0020002 | cellular_component | host cell plasma membrane |
A | 0030254 | biological_process | protein secretion by the type III secretion system |
A | 0030430 | cellular_component | host cell cytoplasm |
A | 0033644 | cellular_component | host cell membrane |
A | 0044164 | cellular_component | host cell cytosol |
B | 0003924 | molecular_function | GTPase activity |
B | 0005525 | molecular_function | GTP binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | binding site for residue PEG A 401 |
Chain | Residue |
A | GLU143 |
A | SER244 |
A | MET245 |
A | TYR278 |
A | HIS282 |
A | HOH528 |
B | ALA76 |
B | ARG79 |
site_id | AC2 |
Number of Residues | 3 |
Details | binding site for residue PEG A 402 |
Chain | Residue |
B | ARG27 |
B | LYS153 |
A | HOH560 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue GOL A 403 |
Chain | Residue |
A | SER213 |
A | GLY221 |
A | ASN222 |
A | PHE223 |
site_id | AC4 |
Number of Residues | 3 |
Details | binding site for residue GOL A 404 |
Chain | Residue |
A | LYS85 |
A | ILE101 |
A | GLU152 |
site_id | AC5 |
Number of Residues | 7 |
Details | binding site for residue GOL A 405 |
Chain | Residue |
A | SER140 |
A | GLU142 |
A | GLU143 |
A | MET189 |
A | MET190 |
A | SER244 |
A | GOL406 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue GOL A 406 |
Chain | Residue |
A | GLU142 |
A | GLU188 |
A | MET189 |
A | GOL405 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue GOL A 407 |
Chain | Residue |
A | GLU67 |
A | HOH525 |
site_id | AC8 |
Number of Residues | 21 |
Details | binding site for residue GDP B 201 |
Chain | Residue |
B | ASP16 |
B | SER17 |
B | GLY18 |
B | VAL19 |
B | GLY20 |
B | LYS21 |
B | THR22 |
B | CYS23 |
B | PHE33 |
B | ASN121 |
B | LYS122 |
B | ASP124 |
B | VAL125 |
B | SER151 |
B | ALA152 |
B | LYS153 |
B | MG202 |
B | HOH305 |
B | HOH307 |
B | HOH309 |
B | HOH318 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue MG B 202 |
Chain | Residue |
B | THR22 |
B | GDP201 |
B | HOH305 |
B | HOH307 |
B | HOH309 |
B | HOH319 |
site_id | AD1 |
Number of Residues | 8 |
Details | binding site for residue GOL B 203 |
Chain | Residue |
B | ARG27 |
B | PHE28 |
B | ASP31 |
B | ARG48 |
B | ASN155 |
B | VAL158 |
B | GLU159 |
B | GOL206 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue GOL B 204 |
Chain | Residue |
B | LYS10 |
B | TRP62 |
B | THR64 |
B | TYR77 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue GOL B 205 |
Chain | Residue |
A | GLU240 |
B | THR4 |
B | SER29 |
B | GLU30 |
B | ILE47 |
B | HOH315 |
site_id | AD4 |
Number of Residues | 4 |
Details | binding site for residue GOL B 206 |
Chain | Residue |
B | LYS3 |
B | SER29 |
B | ARG48 |
B | GOL203 |
Functional Information from PROSITE/UniProt
site_id | PS00675 |
Number of Residues | 14 |
Details | SIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. LLLiGDSGVGKtcV |
Chain | Residue | Details |
B | LEU11-VAL24 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 14 |
Details | Motif: {"description":"Switch 1","evidences":[{"source":"UniProtKB","id":"P62820","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 17 |
Details | Motif: {"description":"Switch 2","evidences":[{"source":"UniProtKB","id":"P62820","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 10 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"21378754","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"27552051","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"3QBT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5SZI","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 3 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"27552051","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"5SZI","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"21378754","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27552051","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3QBT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5SZI","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"21378754","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"3QBT","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI7 |
Number of Residues | 1 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"21378754","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3QBT","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI8 |
Number of Residues | 1 |
Details | Modified residue: {"description":"Phosphothreonine; by LRRK2","evidences":[{"source":"PubMed","id":"26824392","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29125462","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30209220","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30398148","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |