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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6YXY

State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A1bL28mpolymer24128051.41UniProt (Q586A2)
In PDB		Trypanosoma brucei brucei
2A2uL29mpolymer47154045.41UniProt (Q38EM7)
Pfam (PF06984)
In PDB		Trypanosoma brucei brucei
3A3uL30mpolymer21825218.41UniProt (Q38ED8)
In PDB		Trypanosoma brucei brucei
4A5bL32mpolymer809745.71UniProt (Q584F4)
In PDB		Trypanosoma brucei brucei
5A8bL35mpolymer18121661.51UniProt (D0A1K1)
In PDB		Trypanosoma brucei brucei
6AA12S ribosomal RNApolymer1176373911.71GenBank (343546)Trypanosoma brucei brucei
7BAmL67polymer83193569.31UniProt (Q386Z1)
In PDB		Trypanosoma brucei brucei
8EAmt-EngApolymer57665528.31UniProt (Q57TZ4)
Pfam (PF01926)
Pfam (PF14714)
In PDB		Trypanosoma brucei brucei
9BBmL68polymer54162806.31UniProt (D0A135)
In PDB		Trypanosoma brucei brucei
10EBmt-LAF2polymer75485715.31UniProt (D0A9G9)
Pfam (PF00270)
Pfam (PF00271)
In PDB		Trypanosoma brucei brucei
11ECmt-LAF3polymer40646374.71UniProt (Q38FJ3)
Pfam (PF00849)
In PDB		Trypanosoma brucei brucei
12BDmL70polymer54762442.41Trypanosoma brucei brucei
13EDmt-LAF4polymer61669460.41UniProt (Q385G9)
In PDB		Trypanosoma brucei brucei
14AEuL3mpolymer47355073.71UniProt (Q580R4)
Pfam (PF00297)
In PDB		Trypanosoma brucei brucei
15BEmL71polymer44950313.81UniProt (Q57WG1)
In PDB		Trypanosoma brucei brucei
16EEmt-LAF5polymer58667167.31UniProt (Q38DC9)
Pfam (PF00588)
In PDB		Trypanosoma brucei brucei
17UEUNKpolymer332826.51Trypanosoma brucei brucei
18AFuL4mpolymer45953156.71UniProt (D0A7A6)
Pfam (PF00573)
In PDB		Trypanosoma brucei brucei
19BFmL72polymer42649407.01UniProt (A0A3L6LA84)
In PDB		Trypanosoma brucei brucei
20EFmt-LAF6polymer37340106.11UniProt (C9ZWD9)
Pfam (PF00588)
In PDB		Trypanosoma brucei brucei
21EGmt-LAF7polymer15618645.31UniProt (Q387S8)
In PDB		Trypanosoma brucei brucei
22BHmL74polymer34939765.21UniProt (Q38AM5)
In PDB		Trypanosoma brucei brucei
23EHmt-LAF8polymer63468905.01UniProt (Q57ZS6)
In PDB		Trypanosoma brucei brucei
24AIbL9mpolymer26330729.31UniProt (Q57UC5)
Pfam (PF01281)
In PDB		Trypanosoma brucei brucei
25BImL75polymer34239770.51UniProt (D0A108)
In PDB		Trypanosoma brucei brucei
26EIMALSU1polymer34939553.51UniProt (Q584Y2)
Pfam (PF02410)
In PDB		Trypanosoma brucei brucei
27UIUNKpolymer231975.41Trypanosoma brucei brucei
28BJmL76polymer33339638.91UniProt (Q383M2)
In PDB		Trypanosoma brucei brucei
29EJL0R8F8polymer11613444.61UniProt (Q57UQ1)
In PDB		Trypanosoma brucei brucei
30AKuL11mpolymer34240266.81UniProt (Q586R9)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Trypanosoma brucei brucei
31BKmL77polymer38643754.61UniProt (C9ZQR6)
Pfam (PF00226)
In PDB		Trypanosoma brucei brucei
32EK, ERmt-ACPpolymer14816550.82UniProt (Q57WW9)
Pfam (PF00550)
In PDB		Trypanosoma brucei brucei
33UKUNKpolymer252145.61Trypanosoma brucei brucei
34BLmL78polymer31235104.51UniProt (Q389N4)
In PDB		Trypanosoma brucei brucei
35ELmt-LAF12polymer69177908.41UniProt (C9ZVC0)
In PDB		Trypanosoma brucei brucei
36ULUNKpolymer726145.61Trypanosoma brucei brucei
37EMMtg1polymer45150416.51UniProt (Q38E75)
Pfam (PF01926)
In PDB		Trypanosoma brucei brucei
38UMUNKpolymer8698.91Trypanosoma brucei brucei
39ANuL13mpolymer20224341.31UniProt (Q580D5)
Pfam (PF00572)
In PDB		Trypanosoma brucei brucei
40BNmL80polymer30234883.31UniProt (C9ZQF0)
In PDB		Trypanosoma brucei brucei
41ENmt-LAF14polymer73182109.01UniProt (C9ZPS0)
In PDB		Trypanosoma brucei brucei
42AOuL14mpolymer21725133.61Trypanosoma brucei brucei
43BOmL81polymer26229284.51UniProt (Q385L5)
In PDB		Trypanosoma brucei brucei
44EO, EPmt-LAF15apolymer31934621.42UniProt (C9ZMA6)
In PDB		Trypanosoma brucei brucei
45APuL15mpolymer37443780.01UniProt (Q57U68)
Pfam (PF00828)
In PDB		Trypanosoma brucei brucei
46BQmL83polymer23125579.01UniProt (Q57WF8)
Pfam (PF00160)
In PDB		Trypanosoma brucei bruceiPPIase
47EQmt-EngBpolymer65571472.61UniProt (Q380Y8)
Pfam (PF01926)
In PDB		Trypanosoma brucei brucei
48ARbL17mpolymer30135117.81UniProt (Q57YI7)
Pfam (PF01196)
In PDB		Trypanosoma brucei brucei
49BRmL84polymer20524773.61UniProt (Q586A6)
In PDB		Trypanosoma brucei brucei
50BSmL85polymer19822658.01UniProt (Q38FG8)
In PDB		Trypanosoma brucei brucei
51ESmt-LAF18polymer52458830.71UniProt (A0A3L6L1Y4)
Pfam (PF01764)
In PDB		Trypanosoma brucei brucei
52ATbL19mpolymer14416931.51UniProt (Q4GZ98)
In PDB		Trypanosoma brucei brucei
53BTmL86polymer19122376.21UniProt (A0A3L6L8W0)
In PDB		Trypanosoma brucei brucei
54ETmt-LAF19polymer10212076.11UniProt (Q383S4)
In PDB		Trypanosoma brucei brucei
55AUbL20mpolymer21324393.91UniProt (Q383R2)
In PDB		Trypanosoma brucei brucei
56BUmL87polymer18522337.51UniProt (D0A7Z9)
In PDB		Trypanosoma brucei brucei
57EUmt-LAF20polymer566939.41Trypanosoma brucei brucei
58AVbL21mpolymer18820895.31UniProt (C9ZT11)
Pfam (PF00829)
In PDB		Trypanosoma brucei brucei
59BVmL88polymer19022255.61UniProt (C9ZUW3)
In PDB		Trypanosoma brucei brucei
60AWuL22mpolymer27832083.31UniProt (C9ZSI8)
Pfam (PF00237)
In PDB		Trypanosoma brucei brucei
61BWmL89polymer18822213.41UniProt (Q57WW5)
In PDB		Trypanosoma brucei brucei
62AXuL23mpolymer24628848.01UniProt (Q387G3)
In PDB		Trypanosoma brucei brucei
63BXmL90polymer19022123.41UniProt (Q585P1)
Pfam (PF00412)
In PDB		Trypanosoma brucei brucei
64UXUNKpolymer18015336.91Trypanosoma brucei brucei
65AYuL24mpolymer37843999.01UniProt (C9ZK52)
In PDB		Trypanosoma brucei brucei
66BZmL92polymer19020542.31UniProt (Q383Y4)
Pfam (PF00160)
In PDB		Trypanosoma brucei bruceiPPIase
67BamL93polymer15318929.71UniProt (D0A4T0)
In PDB		Trypanosoma brucei brucei
68BbmL94polymer16217831.01UniProt (Q38EP7)
In PDB		Trypanosoma brucei brucei
69BcmL95polymer14617803.41UniProt (Q389K3)
In PDB		Trypanosoma brucei brucei
70AemL41polymer19722610.91UniProt (Q383U6)
In PDB		Trypanosoma brucei brucei
71AfmL42polymer18921602.61UniProt (Q383S1)
In PDB		Trypanosoma brucei brucei
72BfmL98polymer11312968.61UniProt (Q388M2)
In PDB		Trypanosoma brucei brucei
73AgmL43polymer26031300.41UniProt (Q583E5)
Pfam (PF05047)
In PDB		Trypanosoma brucei brucei
74BgmL99polymer10512335.01UniProt (Q587H8)
In PDB		Trypanosoma brucei brucei
75BhmL100polymer9210600.41UniProt (A0A3L6L2V1)
In PDB		Trypanosoma brucei brucei
76BimL101polymer24528455.81UniProt (Q4GZ80)
In PDB		Trypanosoma brucei brucei
77AlmL49polymer21824501.51UniProt (Q57Z82)
In PDB		Trypanosoma brucei brucei
78AomL52polymer1520167692.81UniProt (Q385V2)
In PDB		Trypanosoma brucei brucei
79ApmL53polymer30935656.41UniProt (A0A3L6L3K9)
In PDB		Trypanosoma brucei brucei
80AtmL63polymer15418213.91UniProt (C9ZU82)
In PDB		Trypanosoma brucei brucei
81AvmL64polymer24228546.01UniProt (D0A934)
In PDB		Trypanosoma brucei brucei
82A5, EG, BX, BhZINC IONnon-polymer65.45Chemie (ZN)
83AA, EA, EB, EQMAGNESIUM IONnon-polymer24.333Chemie (MG)
84AASPERMIDINEnon-polymer145.21Chemie (SPD)
85EA, EQGUANOSINE-5'-TRIPHOSPHATEnon-polymer523.23Chemie (GTP)
86EASODIUM IONnon-polymer23.02Chemie (NA)
87EBADENOSINE-5'-TRIPHOSPHATEnon-polymer507.21Chemie (ATP)
88EK, ERS-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATEnon-polymer496.62Chemie (PM8)
89AvNICOTINAMIDE-ADENINE-DINUCLEOTIDEnon-polymer663.41Chemie (NAD)
90waterwater18.010Chemie (HOH)
Sequence modifications
A2: 1 - 471 (UniProt: Q38EM7)
PDBExternal DatabaseDetails
Gly 238Ala 238conflict
A3: 1 - 218 (UniProt: Q38ED8)
PDBExternal DatabaseDetails
Val 22Gly 22conflict
Ser 26Leu 26conflict
Asn 35Ser 35conflict
Unk 198Ala 198conflict
AA: 1 - 1176 (GenBank: 343546)
PDBExternal DatabaseDetails
N 1032A 2395conflict
N 1033U 2396conflict
N 1034U 2397conflict
N 1035G 2398conflict
N 1036U 2399conflict
N 1037U 2400conflict
N 1038C 2401conflict
N 1039A 2402conflict
N 1040U 2403conflict
N 1041C 2404conflict
N 1042A 2405conflict
N 1043A 2406conflict
N 1044A 2407conflict
N 1045A 2408conflict
N 1046U 2409conflict
N 1047A 2410conflict
N 1048G 2411conflict
N 1049U 2412conflict
BA: 1 - 831 (UniProt: Q386Z1)
PDBExternal DatabaseDetails
Cys 359Gly 359conflict
Pro 385Ser 385conflict
Ser 387Gly 387conflict
Ala 456Val 456conflict
Leu 520Arg 520conflict
EA: 1 - 576 (UniProt: Q57TZ4)
PDBExternal DatabaseDetails
Unk 12Arg 12conflict
EB: 1 - 754 (UniProt: D0A9G9)
PDBExternal DatabaseDetails
Ala 301Thr 301conflict
EC: 1 - 406 (UniProt: Q38FJ3)
PDBExternal DatabaseDetails
Unk 25His 25conflict
ED: 1 - 616 (UniProt: Q385G9)
PDBExternal DatabaseDetails
Arg 252Lys 252conflict
Unk 326Gly 326conflict
EE: 1 - 586 (UniProt: Q38DC9)
PDBExternal DatabaseDetails
Val 20Met 20conflict
Arg 27Lys 27conflict
Asp 337Gly 337conflict
Val 546Ala 546conflict
AF: 1 - 459 (UniProt: D0A7A6)
PDBExternal DatabaseDetails
Thr 12Ala 12conflict
EF: 1 - 373 (UniProt: C9ZWD9)
PDBExternal DatabaseDetails
Unk 47Glu 47conflict
Unk 48Val 48conflict
Unk 49Ala 49conflict
Unk 50Gln 50conflict
Unk 51Val 51conflict
Unk 52Thr 52conflict
EH: 1 - 634 (UniProt: Q57ZS6)
PDBExternal DatabaseDetails
Unk 166Gly 166conflict
Pro 485Ser 485conflict
Arg 495Lys 495conflict
AI: 1 - 263 (UniProt: Q57UC5)
PDBExternal DatabaseDetails
Unk 249Lys 249conflict
Unk 250Gly 250conflict
Unk 251Pro 251conflict
Unk 252Val 252conflict
Unk 253Lys 253conflict
Unk 254Gln 254conflict
Unk 255Arg 255conflict
Unk 256Lys 256conflict
Unk 257Ala 257conflict
Unk 258Arg 258conflict
BI: 1 - 342 (UniProt: D0A108)
PDBExternal DatabaseDetails
Asn 227Asp 227conflict
EI: 1 - 349 (UniProt: Q584Y2)
PDBExternal DatabaseDetails
Tyr 12Cys 12conflict
Pro 70Leu 70conflict
His 129Arg 129conflict
Ser 144Leu 144conflict
BJ: 1 - 333 (UniProt: Q383M2)
PDBExternal DatabaseDetails
Glu 329Ala 329conflict
AK: 1 - 342 (UniProt: Q586R9)
PDBExternal DatabaseDetails
Unk 327Ala 327conflict
BK: 1 - 386 (UniProt: C9ZQR6)
PDBExternal DatabaseDetails
Unk 33His 33conflict
Unk 60Pro 60conflict
Val 348Leu 348conflict
BL: 3 - 314 (UniProt: Q389N4)
PDBExternal DatabaseDetails
Tyr 77His 75conflict
Ala 218Thr 216conflict
Ser 292Asn 290conflict
EL: 1 - 691 (UniProt: C9ZVC0)
PDBExternal DatabaseDetails
Unk 104Ile 104conflict
Glu 108Gly 108conflict
Val 126Leu 126conflict
Ser 188Phe 188conflict
EM: 1 - 451 (UniProt: Q38E75)
PDBExternal DatabaseDetails
Unk 407Pro 407conflict
EN: 1 - 731 (UniProt: C9ZPS0)
PDBExternal DatabaseDetails
Glu 18Gly 18conflict
Lys 310Asn 310conflict
Cys 676Tyr 676conflict
BO: 1 - 262 (UniProt: Q385L5)
PDBExternal DatabaseDetails
Thr 30Ile 30conflict
Leu 123Met 123conflict
Pro 134Ser 134conflict
Asn 196Ser 196conflict
Ala 238Glu 238conflict
EQ: 1 - 656 (UniProt: Q380Y8)
PDBExternal DatabaseDetails
Cys 26Arg 26conflict
Ser 272Asn 272conflict
Ala 325Thr 325conflict
Ala 326Thr 326conflict
Unk 379Pro 379conflict
Ser 400Pro 400conflict
Arg 426Gln 426conflict
Glu 447Lys 447conflict
Unk 448Ser 448conflict
Ser 468Pro 468conflict
Ser 472Pro 472conflict
BS: 1 - 198 (UniProt: Q38FG8)
PDBExternal DatabaseDetails
Ile 45Val 45conflict
Unk 173Leu 173conflict
AX: 1 - 246 (UniProt: Q387G3)
PDBExternal DatabaseDetails
Tyr 126His 126conflict
AY: 1 - 378 (UniProt: C9ZK52)
PDBExternal DatabaseDetails
Glu 345Val 345conflict
Bi: 1 - 245 (UniProt: Q4GZ80)
PDBExternal DatabaseDetails
Met 143Ile 143conflict
Val 163Leu 163conflict
Ile 213Pro 213conflict
Ao: -1260 - 259 (UniProt: Q385V2)
PDBExternal DatabaseDetails
Gln -1239Arg 22conflict
Ala -1157Glu 104conflict
Ala -1105Val 156conflict
Gly -1062Ser 199conflict
His -879Tyr 382conflict
Unk -776His 485conflict
Unk -742Lys 519conflict
Glu -724Lys 537conflict
Unk -707Ser 554conflict
Glu -521Gly 740conflict
Arg -515Gln 746conflict
Leu -481Val 780conflict
Ala -214Val 1047conflict
Leu -175Val 1086conflict
-Leu 1249deletion
-Lys 1250deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains83
Total formula weight3248158.1
Non-Polymers*Number of molecules48
Total formula weight5053.7
All*Total formula weight3253211.7
*Water molecules are not included.

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PDB entries from 2024-07-24

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