6YWL
Crystal structure of SARS-CoV-2 (Covid-19) NSP3 macrodomain in complex with ADP-ribose
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | NSP3 macrodomain | polymer | 173 | 18676.4 | 5 | UniProt (P0DTD1) Pfam (PF01661) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | pp1ab,ORF1ab polyprotein |
| 2 | F, M, P, T, X (A, B, C, D, E) | ADENOSINE-5-DIPHOSPHORIBOSE | non-polymer | 559.3 | 5 | Chemie (APR) | |||
| 3 | G, H, I, J, K... (A, B, C, D, E) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 14 | Chemie (EDO) | |||
| 4 | Q, Y (C, E) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 5 | AA, BA, CA, DA, EA (A, B, C, D, E) | water | water | 18.0 | 190 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 3 - 172 (UniProt: P0DTD1)
| PDB | External Database | Details |
|---|---|---|
| Gly 0 | - | expression tag |
| His 1 | - | expression tag |
| Met 2 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 93381.9 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 3714.1 | |
| All* | Total formula weight | 97096.0 |
