6Y8O
Mycobacterium smegmatis GyrB 22kDa ATPase sub-domain in complex with novobiocin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | DNA gyrase subunit B | polymer | 234 | 26152.2 | 2 | UniProt (P0C559) Pfam (PF02518) UniProt (by SIFTS) (A0QNE0) | Mycolicibacterium smegmatis | |
| 2 | C, M (A, B) | NOVOBIOCIN | non-polymer | 612.6 | 2 | Chemie (NOV) | |||
| 3 | D, E, F, G, H... (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 10 | Chemie (EDO) | |||
| 4 | I, J, S (A, B) | ACETATE ION | non-polymer | 59.0 | 3 | Chemie (ACT) | |||
| 5 | K, L, T, U, V (A, B) | SODIUM ION | non-polymer | 23.0 | 5 | Chemie (NA) | |||
| 6 | W, X (A, B) | water | water | 18.0 | 378 | Chemie (HOH) |
Sequence modifications
A, B: 9 - 255 (UniProt: P0C559)
| PDB | External Database | Details |
|---|---|---|
| Met -10 | - | initiating methionine |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| His -5 | - | expression tag |
| His -4 | - | expression tag |
| Ser -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Arg 0 | - | expression tag |
| Glu 1 | - | expression tag |
| Asn 2 | - | expression tag |
| Leu 3 | - | expression tag |
| Tyr 4 | - | expression tag |
| Phe 5 | - | expression tag |
| Gln 6 | - | expression tag |
| Gly 7 | - | expression tag |
| Met 8 | - | expression tag |
| Asp 213 | Val 213 | engineered mutation |
| - | Val 219 | deletion |
| - | Asp 220 | deletion |
| - | Asp 221 | deletion |
| - | Val 222 | deletion |
| - | Val 223 | deletion |
| - | Lys 224 | deletion |
| - | Asp 225 | deletion |
| - | Thr 226 | deletion |
| - | Ala 227 | deletion |
| - | Glu 228 | deletion |
| - | Ala 229 | deletion |
| - | Pro 230 | deletion |
| - | Lys 231 | deletion |
| - | Thr 232 | deletion |
| - | Ala 233 | deletion |
| - | Asp 234 | deletion |
| - | Glu 235 | deletion |
| - | Lys 236 | deletion |
| - | Ala 237 | deletion |
| - | Ala 238 | deletion |
| - | Glu 239 | deletion |
| - | Ala 240 | deletion |
| - | Thr 241 | deletion |
| - | Gly 242 | deletion |
| - | Pro 243 | deletion |
| - | Ser 244 | deletion |
| - | Lys 245 | deletion |
| Gly 246 | Val 246 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 52304.5 | |
| Non-Polymers* | Number of molecules | 20 |
| Total formula weight | 2138.0 | |
| All* | Total formula weight | 54442.5 |
