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6Y8O

Mycobacterium smegmatis GyrB 22kDa ATPase sub-domain in complex with novobiocin

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006265biological_processDNA topological change
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue NOV A 301
ChainResidue
AASN52
AARG141
AHOH403
AHOH421
AHOH437
AHOH467
AHOH488
AHOH489
AHOH516
AHOH520
AHOH526
AGLU56
BGLY31
BMET32
AASP79
AARG82
AGLY83
AILE84
APRO85
AGLU87
ATHR95

site_idAC2
Number of Residues6
Detailsbinding site for residue EDO A 302
ChainResidue
AGLU145
AGLY162
AGLU163
AHOH435
AHOH538
BASP72

site_idAC3
Number of Residues7
Detailsbinding site for residue EDO A 303
ChainResidue
APHE147
AGLN148
ATYR149
ALYS157
ALYS159
BARG134
BTYR149

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 304
ChainResidue
AACT307
AHOH401
BARG192
BGLN195
BGLU196

site_idAC5
Number of Residues8
Detailsbinding site for residue EDO A 305
ChainResidue
AARG141
AASP142
ATHR167
APHE251
AHIS252
ATYR253
AHOH431
AHOH500

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 306
ChainResidue
AGLY203
AHIS252
APRO254
AGLY255
AHOH530

site_idAC7
Number of Residues6
Detailsbinding site for residue ACT A 307
ChainResidue
ATHR164
ALYS165
AEDO304
AHOH412
BGLU196
BTYR253

site_idAC8
Number of Residues6
Detailsbinding site for residue ACT A 308
ChainResidue
ASER36
AGLY38
AGLU39
AARG40
AGLY41
AHOH406

site_idAC9
Number of Residues4
Detailsbinding site for residue NA A 309
ChainResidue
AASP80
AGLY81
ATHR167
AHOH478

site_idAD1
Number of Residues3
Detailsbinding site for residue NA A 310
ChainResidue
AGLU136
AHOH429
BGLU136

site_idAD2
Number of Residues20
Detailsbinding site for residue NOV B 301
ChainResidue
AMET32
AGLY35
AHOH483
BASN52
BGLU56
BASP79
BARG82
BGLY83
BILE84
BPRO85
BGLU87
BVAL99
BARG141
BHOH415
BHOH429
BHOH439
BHOH465
BHOH494
BHOH500
BHOH539

site_idAD3
Number of Residues10
Detailsbinding site for residue EDO B 302
ChainResidue
BHOH528
BHOH556
AASP72
BGLU145
BGLY162
BGLU163
BTHR164
BHOH401
BHOH414
BHOH426

site_idAD4
Number of Residues6
Detailsbinding site for residue EDO B 303
ChainResidue
BASP184
BPHE251
BHIS252
BTYR253
BHOH459
BHOH506

site_idAD5
Number of Residues9
Detailsbinding site for residue EDO B 304
ChainResidue
BTYR33
BGLU48
BGLY124
BVAL127
BNA310
BHOH482
BHOH501
BHOH548
BHOH575

site_idAD6
Number of Residues4
Detailsbinding site for residue EDO B 305
ChainResidue
BARG64
BASP66
BARG78
BASP80

site_idAD7
Number of Residues7
Detailsbinding site for residue EDO B 306
ChainResidue
BGLY38
BGLU39
BGLU181
BHIS248
BVAL250
BACT307
BHOH451

site_idAD8
Number of Residues7
Detailsbinding site for residue ACT B 307
ChainResidue
BSER36
BGLY38
BGLU39
BARG40
BGLY41
BEDO306
BHOH451

site_idAD9
Number of Residues5
Detailsbinding site for residue NA B 308
ChainResidue
BASP80
BGLY81
BTHR167
BHOH570
BHOH573

site_idAE1
Number of Residues4
Detailsbinding site for residue NA B 309
ChainResidue
BGLU48
BHOH444
BHOH482
BHOH593

site_idAE2
Number of Residues6
Detailsbinding site for residue NA B 310
ChainResidue
AHOH405
BTYR33
BEDO304
BHOH548
BHOH571
BHOH583

249697

PDB entries from 2026-02-25

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