6Y09
Crystal structure of Atg16L in complex with GTP-bound Rab33B (Q92L)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, B) | Ras-related protein Rab-33B | polymer | 192 | 21960.4 | 2 | UniProt (Q9H082) Pfam (PF00071) | Homo sapiens (Human) | |
| 2 | B, D (C, D) | Autophagy-related protein 16-1 | polymer | 126 | 14532.0 | 2 | UniProt (Q8C0J2) Pfam (PF08614) | Mus musculus (House mouse) | APG16-like 1 |
| 3 | E, L (A, B) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 4 | F, M (A, B) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 2 | Chemie (GTP) | |||
| 5 | G, K, N, W (A, C, B, D) | PHOSPHATE ION | non-polymer | 95.0 | 4 | Chemie (PO4) | |||
| 6 | H, I, J, P, Q... (A, B) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 9 | Chemie (PEG) | |||
| 7 | O, R (B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
| 8 | AA, X, Y, Z (D, A, C, B) | water | water | 18.0 | 214 | Chemie (HOH) |
Sequence modifications
A, B: 30 - 218 (UniProt: Q9H082)
C, D: 141 - 265 (UniProt: Q8C0J2)
| PDB | External Database | Details |
|---|---|---|
| Gly 27 | - | expression tag |
| Pro 28 | - | expression tag |
| Met 29 | - | expression tag |
| Leu 92 | Gln 92 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Met 140 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 72984.8 | |
| Non-Polymers* | Number of molecules | 19 |
| Total formula weight | 2554.1 | |
| All* | Total formula weight | 75538.9 |
