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6Y09

Crystal structure of Atg16L in complex with GTP-bound Rab33B (Q92L)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
A0032482biological_processRab protein signal transduction
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
B0032482biological_processRab protein signal transduction
C0000045biological_processautophagosome assembly
D0000045biological_processautophagosome assembly
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG A 301
ChainResidue
ATHR47
ATHR65
AGTP302
AHOH415
AHOH417

site_idAC2
Number of Residues24
Detailsbinding site for residue GTP A 302
ChainResidue
ALYS46
ATHR47
ACYS48
ATHR62
ATHR65
AGLY91
AASN148
ALYS149
AASP151
ALEU152
ASER178
AALA179
ALYS180
AMG301
APEG304
AHOH415
AHOH417
AHOH419
AHOH439
AHOH456
ASER42
AASN43
AVAL44
AGLY45

site_idAC3
Number of Residues9
Detailsbinding site for residue PO4 A 303
ChainResidue
ALYS133
ALEU136
AALA138
APEG306
AHOH422
BTHR160
BGLU176
BASN185
BPEG308

site_idAC4
Number of Residues5
Detailsbinding site for residue PEG A 304
ChainResidue
AASP115
ATHR117
AASN118
ALYS149
AGTP302

site_idAC5
Number of Residues5
Detailsbinding site for residue PEG A 305
ChainResidue
AHIS123
ALEU162
APHE166
AHOH402
AHOH414

site_idAC6
Number of Residues11
Detailsbinding site for residue PEG A 306
ChainResidue
AILE129
ACYS132
ALYS133
ALEU136
AARG143
APO4303
AHOH422
AHOH447
BARG153
BASP184
BASN185

site_idAC7
Number of Residues3
Detailsbinding site for residue PO4 C 301
ChainResidue
CGLU197
DTRP194
DGLU197

site_idAC8
Number of Residues3
Detailsbinding site for residue MG B 301
ChainResidue
BTHR47
BTHR65
BGTP302

site_idAC9
Number of Residues23
Detailsbinding site for residue GTP B 302
ChainResidue
BSER42
BASN43
BVAL44
BGLY45
BLYS46
BTHR47
BCYS48
BTHR62
BALA64
BTHR65
BGLY91
BASN148
BLYS149
BASP151
BLEU152
BSER178
BALA179
BLYS180
BMG301
BHOH410
BHOH425
BHOH434
BHOH445

site_idAD1
Number of Residues9
Detailsbinding site for residue PO4 B 303
ChainResidue
ATHR160
AGLU176
AHOH410
BLYS133
BLEU136
BALA138
BEDO304
BHOH406
BHOH460

site_idAD2
Number of Residues9
Detailsbinding site for residue EDO B 304
ChainResidue
BCYS132
BLYS133
BLEU136
BARG143
BPO4303
BHOH429
BHOH435
AARG153
AASN185

site_idAD3
Number of Residues6
Detailsbinding site for residue PEG B 305
ChainResidue
ATHR169
BARG52
BLYS180
BASN181
BPRO182
BHOH474

site_idAD4
Number of Residues3
Detailsbinding site for residue PEG B 306
ChainResidue
BALA120
BHIS123
BSER124

site_idAD5
Number of Residues2
Detailsbinding site for residue EDO B 307
ChainResidue
AHIS187
BHIS170

site_idAD6
Number of Residues7
Detailsbinding site for residue PEG B 308
ChainResidue
ALYS133
AGLN134
APO4303
BLEU174
BGLU176
BASN185
BASP186

site_idAD7
Number of Residues5
Detailsbinding site for residue PEG B 309
ChainResidue
BTYR104
BASN106
BVAL107
BLEU136
BLEU137

site_idAD8
Number of Residues4
Detailsbinding site for residue PEG B 310
ChainResidue
BSER127
BTRP128
BGLU131
BHOH401

site_idAD9
Number of Residues8
Detailsbinding site for residue PEG B 311
ChainResidue
BASP41
BSER42
BASN43
BVAL44
BASP115
BASN118
BSER121
BHOH459

site_idAE1
Number of Residues4
Detailsbinding site for residue PO4 D 301
ChainResidue
BARG94
CGLU186
DGLN188
DVAL191

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AILE39
AASP88
AASN148
BILE39
BASP88
BASN148

227344

PDB entries from 2024-11-13

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