6XUP
Archaeoglobus fulgidus Argonaute protein with DNA oligoduplex 5'-pATCGTGGCCACGAT
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, B) | Piwi protein | polymer | 441 | 50921.1 | 2 | UniProt (A0A101DYI0) Pfam (PF02171) UniProt (by SIFTS) (O28951) | Archaeoglobus fulgidus | |
| 2 | B, C, E, F (R, S, P, Q) | 5'-D(*AP*TP*CP*GP*TP*GP*GP*CP*CP*AP*CP*GP*AP*TP)-3' | polymer | 14 | 4280.8 | 4 | Escherichia coli | ||
| 3 | G, H, W (A, B) | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) | |||
| 4 | I (A) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 5 | J, K, L, M, N... (A, B) | BETA-MERCAPTOETHANOL | non-polymer | 78.1 | 7 | Chemie (BME) | |||
| 6 | P, Q, R, S, T... (A, B) | GLYCEROL | non-polymer | 92.1 | 7 | Chemie (GOL) | |||
| 7 | AA, U (B, A) | CACODYLATE ION | non-polymer | 137.0 | 2 | Chemie (CAC) | |||
| 8 | V (A) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) | |||
| 9 | BA, CA, DA, EA, FA... (A, R, S, B, P...) | water | water | 18.0 | 449 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 427 (UniProt: A0A101DYI0)
| PDB | External Database | Details |
|---|---|---|
| Met -13 | - | initiating methionine |
| Gly -12 | - | expression tag |
| Ser -11 | - | expression tag |
| Ser -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| His -5 | - | expression tag |
| His -4 | - | expression tag |
| Ser -3 | - | expression tag |
| Gln -2 | - | expression tag |
| Asp -1 | - | expression tag |
| Pro 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 118965.4 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 1613.0 | |
| All* | Total formula weight | 120578.4 |
