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6XUP

Archaeoglobus fulgidus Argonaute protein with DNA oligoduplex 5'-pATCGTGGCCACGAT

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0046872molecular_functionmetal ion binding
B0003676molecular_functionnucleic acid binding
B0003677molecular_functionDNA binding
B0003723molecular_functionRNA binding
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG A 501
ChainResidue
AGLN159
AARG380
ALEU427
RDA1
RDC3
RHOH104

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 502
ChainResidue
AASN413
AHOH607
AHOH815
AASN132
APRO411
AILE412

site_idAC3
Number of Residues3
Detailsbinding site for residue CL A 503
ChainResidue
AASN146
ASER282
AARG283

site_idAC4
Number of Residues7
Detailsbinding site for residue BME A 504
ChainResidue
AGLY206
ATHR207
AMET208
AMET377
ATRP379
ATYR393
AHOH792

site_idAC5
Number of Residues2
Detailsbinding site for residue BME A 505
ChainResidue
ATYR225
ASER228

site_idAC6
Number of Residues2
Detailsbinding site for residue BME A 507
ChainResidue
AILE104
BHIS79

site_idAC7
Number of Residues6
Detailsbinding site for residue BME A 508
ChainResidue
ASER228
ALYS231
ALYS232
AHOH719
AHOH720
AHOH783

site_idAC8
Number of Residues7
Detailsbinding site for residue BME A 509
ChainResidue
ASER214
APRO215
AILE401
APRO411
AILE412
AHOH653
AHOH677

site_idAC9
Number of Residues1
Detailsbinding site for residue GOL A 510
ChainResidue
BLEU324

site_idAD1
Number of Residues6
Detailsbinding site for residue GOL A 511
ChainResidue
AASN35
ATYR36
AILE216
AASN405
AHOH653
AHOH718

site_idAD2
Number of Residues7
Detailsbinding site for residue GOL A 512
ChainResidue
AHOH615
BPRO42
BSER43
BLEU44
BASN47
BHIS79
BHOH611

site_idAD3
Number of Residues7
Detailsbinding site for residue GOL A 513
ChainResidue
AILE131
AASN132
ASER133
AILE134
AASN417
ASER419
AHOH622

site_idAD4
Number of Residues5
Detailsbinding site for residue GOL A 514
ChainResidue
AASP180
ALYS204
ATRP244
AASP245
AHOH770

site_idAD5
Number of Residues3
Detailsbinding site for residue CAC A 515
ChainResidue
AGLY408
AHOH601
BLYS45

site_idAD6
Number of Residues6
Detailsbinding site for residue K A 516
ChainResidue
AASN54
ATYR88
AVAL114
ALEU115
APRO116
AHOH640

site_idAD7
Number of Residues5
Detailsbinding site for residue MG B 501
ChainResidue
BGLN159
BLEU427
PDA1
PDC3
PHOH103

site_idAD8
Number of Residues3
Detailsbinding site for residue BME B 502
ChainResidue
BASN35
BILE216
BASN405

site_idAD9
Number of Residues8
Detailsbinding site for residue GOL B 503
ChainResidue
BILE213
BSER214
BILE216
BILE401
BPRO411
BILE412
BHOH618
BHOH662

site_idAE1
Number of Residues4
Detailsbinding site for residue GOL B 504
ChainResidue
BLYS127
BLEU396
BPHE426
PHOH103

site_idAE2
Number of Residues5
Detailsbinding site for residue CAC B 505
ChainResidue
ALYS45
BGLY408
BGLY409
BTYR410
BHOH628

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:1YTU, ECO:0007744|PDB:2BGG, ECO:0007744|PDB:2W42
ChainResidueDetails
AGLN159
BGLN159
BLEU427
ALEU427

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PDB entries from 2024-06-12

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