6WDZ
Porcine circovirus 2 Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | C, I, F, J | DNA (5'-D(*TP*AP*GP*TP*AP*TP*TP*AP*CP*C)-3') | polymer | 10 | 3019.0 | 4 | Porcine circovirus 2 | ||
| 2 | D, G, A | ATP-dependent helicase Rep | polymer | 115 | 13260.0 | 3 | UniProt (A0A060L113) Pfam (PF02407) UniProt (by SIFTS) (Q8BB16) In PDB | Porcine circovirus 2 (PCV2) | RepP,Replication-associated protein |
| 3 | D, G, A | MANGANESE (II) ION | non-polymer | 54.9 | 3 | Chemie (MN) | |||
| 4 | G | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
| 5 | water | water | 18.0 | 194 | Chemie (HOH) |
Sequence modifications
D, G, A: 2 - 116 (UniProt: A0A060L113)
| PDB | External Database | Details |
|---|---|---|
| Phe 96 | Tyr 96 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 51856.0 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 289.0 | |
| All* | Total formula weight | 52144.9 |
