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6VG6

Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dGTP*

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1P, BDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3')polymer134096.72Homo sapiens
2T, CDNA (5'-D(*TP*CP*AP*TP*(A38)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')polymer185387.52Homo sapiens
3A, DDNA polymerase IVpolymer34139019.52UniProt (A0A0E3K6E9)
Pfam (PF00817)
Pfam (PF11798)
Pfam (PF11799)
UniProt (by SIFTS) (Q97W02)
In PDB
Saccharolobus solfataricusPol IV
4P, D2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosinenon-polymer506.22Chemie (XG4)
5P, A, DMAGNESIUM IONnon-polymer24.34Chemie (MG)
6A, DGLYCEROLnon-polymer92.12Chemie (GOL)
7waterwater18.022Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight97007.4
Non-Polymers*Number of molecules8
Total formula weight1293.8
All*Total formula weight98301.2
*Water molecules are not included.

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PDB entries from 2024-07-24

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