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6VG6

Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dGTP*

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D
(P, B)
DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3')polymer134096.72Homo sapiens
2B, E
(T, C)
DNA (5'-D(*TP*CP*AP*TP*(A38)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')polymer185387.52Homo sapiens
3C, F
(A, D)
DNA polymerase IVpolymer34139019.52UniProt (A0A0E3K6E9)
Pfam (PF00817)
Pfam (PF11798)
Pfam (PF11799)
UniProt (by SIFTS) (Q97W02)
Saccharolobus solfataricusPol IV
4G, L
(P, D)
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosinenon-polymer506.22Chemie (XG4)
5H, J, M, N
(P, A, D)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
6I, K
(A, D)
GLYCEROLnon-polymer92.12Chemie (GOL)
7O, P, Q, R
(P, A, C, D)
waterwater18.022Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight97007.4
Non-Polymers*Number of molecules8
Total formula weight1293.8
All*Total formula weight98301.2
*Water molecules are not included.

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PDB entries from 2025-12-10

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