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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6TC3

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
116S116S rRNApolymer1534497405.01GenBank (1108560344)Escherichia coli K-12
2S02130S ribosomal protein S2polymer24126781.71UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS2
3S03130S ribosomal protein S3polymer23326031.31UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS3
4S04130S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS4
5S05130S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS5
6S06130S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS6
7S07130S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS7
8S08130S ribosomal protein S8polymer13014146.61UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS8
9S09130S ribosomal protein S9polymer13014886.31UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS9
10S10130S ribosomal protein S10polymer10311755.61UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS10
11S11130S ribosomal protein S11polymer12913871.01UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS11
12S12130S ribosomal protein S12polymer12413814.21UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS12
13S13130S ribosomal protein S13polymer11813128.51UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS13
14S14130S ribosomal protein S14polymer10211677.61UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS14
15S15130S ribosomal protein S15polymer8910290.81UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS15
16S16130S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS16
17S17130S ribosomal protein S17polymer849724.51UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS17
18S18130S ribosomal protein S18polymer759005.51UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS18
19S19130S ribosomal protein S19polymer9210455.41UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS19
20S20130S ribosomal protein S20polymer879708.51UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS20
21S21130S ribosomal protein S21polymer718524.01UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS21
2223S123S rRNApolymer2897939607.31Escherichia coli K-12
2305S15S rRNApolymer12038790.11GenBank (1726050194)Escherichia coli K-12
24L02150S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL2
25L03150S ribosomal protein L3polymer20922291.61UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL3
26L04150S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL4
27L05150S ribosomal protein L5polymer17920333.61UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL5
28L06150S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL6
29L09150S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF03948)
Pfam (PF01281)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL9
30L31150S ribosomal protein L31polymer707887.11UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL31-A
31L13150S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL13
32L14150S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL14
33L15150S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL15
34L16150S ribosomal protein L16polymer13615327.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL16
35L17150S ribosomal protein L17polymer12714393.71UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL17
36L18150S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL18
37L19150S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL19
38L20150S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL20
39L21150S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL21
40L22150S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL22
41L23150S ribosomal protein L23polymer10011222.21UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL23
42L24150S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL24
43L25150S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL25
44L27150S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL27
45L28150S ribosomal protein L28polymer789027.61UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL28
46L29150S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL29
47L30150S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL30
48L32150S ribosomal protein L32polymer576463.41UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL32
49L33150S ribosomal protein L33polymer556388.61UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL33
50L34150S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL34
51L35150S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL35,Ribosomal protein A
52L36150S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL36-A,Ribosomal protein B
53SPE1SpeFLpolymer344286.91UniProt (A0A4S4NWS2)
UniProt (by SIFTS) (P0DTV7)
In PDB		Escherichia coli K-12
54MRN1mRNApolymer72173.31Escherichia coli K-12
55PTR1P-site Arg-tRNApolymer7624582.81Escherichia coli K-12
5616S1, 23S1, PTR1, L231, SPE1MAGNESIUM IONnon-polymer24.3339Chemie (MG)
5716S1, 23S1, 05S1, L031POTASSIUM IONnon-polymer39.1147Chemie (K)
5823S1, 16S1, L021, L031, L171...UNKNOWN ATOM OR IONnon-polymer35.51201Chemie (UNX)
59L311, S021, L361ZINC IONnon-polymer65.43Chemie (ZN)
6023S1L-ornithinenon-polymer132.21Chemie (ORN)
61waterwater18.0800Chemie (HOH)
Sequence modifications
S141: 0 - 101 (UniProt: P0AG59)
PDBExternal DatabaseDetails
Ala 35-insertion
SPE1: 1 - 34 (UniProt: A0A4S4NWS2)
PDBExternal DatabaseDetails
Ser 5Asn 5conflict
Thr 7Leu 7conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains55
Total formula weight2166956.8
Non-Polymers*Number of molecules1691
Total formula weight56894.2
All*Total formula weight2223851.1
*Water molecules are not included.

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PDB entries from 2024-07-10

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