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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6SNT

Yeast 80S ribosome stalled on SDD1 mRNA.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(2)		Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNApolymer1800579761.91REF (831416138)Saccharomyces cerevisiae
2B
(A)		40S ribosomal protein S0-Apolymer25228051.31UniProt (P32905)
Pfam (PF00318)		Saccharomyces cerevisiaeNucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
3C
(B)		40S ribosomal protein S1-Apolymer25528798.51UniProt (P33442)
Pfam (PF01015)		Saccharomyces cerevisiaeRP10A,Small ribosomal subunit protein eS1-A
4D
(P)		40S ribosomal protein S15polymer14216031.91UniProt (Q01855)
Pfam (PF00203)		Saccharomyces cerevisiaeRIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
5E
(C)		40S ribosomal protein S2polymer25427490.81UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)		Saccharomyces cerevisiaeOmnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
6F
(D)		40S ribosomal protein S3polymer24026542.81UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)		Saccharomyces cerevisiaeRP13,Small ribosomal subunit protein uS3,YS3
7G
(E)		40S ribosomal protein S4-Apolymer26129469.31UniProt (P0CX35)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Pfam (PF08071)		Saccharomyces cerevisiaeRP5,S7,Small ribosomal subunit protein eS4-A,YS6
8H
(F)		40S ribosomal protein S5polymer22525072.61UniProt (P26783)
Pfam (PF00177)		Saccharomyces cerevisiaeRP14,S2,Small ribosomal subunit protein uS7,YS8
9I
(G)		40S ribosomal protein S6-Apolymer23627054.51UniProt (P0CX37)
Pfam (PF01092)		Saccharomyces cerevisiaeRP9,S10,Small ribosomal subunit protein eS6-A,YS4
10J
(H)		40S ribosomal protein S7-Apolymer19021658.21UniProt (P26786)
Pfam (PF01251)		Saccharomyces cerevisiaeRP30,RP40,Small ribosomal subunit protein eS7-A
11K
(I)		40S ribosomal protein S8-Apolymer20022537.81UniProt (P0CX39)
Pfam (PF01201)		Saccharomyces cerevisiaeRP19,S14,Small ribosomal subunit protein eS8-A,YS9
12L
(J)		40S ribosomal protein S9-Apolymer19722487.91UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)		Saccharomyces cerevisiaeRP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
13M
(K)		40S ribosomal protein S10-Apolymer10512757.41UniProt (Q08745)
Pfam (PF03501)		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS10-A
14N
(L)		40S ribosomal protein S11-Apolymer15617785.91UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)		Saccharomyces cerevisiaeRP41,S18,Small ribosomal subunit protein uS17-A,YS12
15O
(M)		40S ribosomal protein S12polymer14315488.61UniProt (P48589)
Pfam (PF01248)		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS12
16P
(N)		40S ribosomal protein S13polymer15117059.91UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)		Saccharomyces cerevisiaeS27a,Small ribosomal subunit protein uS15,YS15
17Q
(O)		40S ribosomal protein S14-Apolymer13714562.71UniProt (P06367)
Pfam (PF00411)		Saccharomyces cerevisiaeRP59A,Small ribosomal subunit protein uS11-A
18R
(Q)		40S ribosomal protein S16-Apolymer14315877.51UniProt (P0CX51)
Pfam (PF00380)		Saccharomyces cerevisiaeRP61R,Small ribosomal subunit protein uS9-A
19S
(R)		40S ribosomal protein S17-Bpolymer13615835.41UniProt (P14127)
Pfam (PF00833)		Saccharomyces cerevisiaeRP51B,Small ribosomal subunit protein eS17-B
20T
(S)		40S ribosomal protein S18-Apolymer14617071.61UniProt (P0CX55)
Pfam (PF00416)		Saccharomyces cerevisiaeSmall ribosomal subunit protein uS13-A
21U
(T)		40S ribosomal protein S19-Apolymer14415942.11UniProt (P07280)
Pfam (PF01090)		Saccharomyces cerevisiaeRP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
22V
(U)		40S ribosomal protein S20polymer12113929.01UniProt (P38701)
Pfam (PF00338)		Saccharomyces cerevisiaeSmall ribosomal subunit protein uS10
23W
(V)		40S ribosomal protein S21-Apolymer879758.81UniProt (P0C0V8)
Pfam (PF01249)		Saccharomyces cerevisiaeS26,Small ribosomal subunit protein eS21-A,YS25
24X
(W)		40S ribosomal protein S22-Apolymer13014650.11UniProt (P0C0W1)
Pfam (PF00410)		Saccharomyces cerevisiaeRP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
25Y
(X)		40S ribosomal protein S23-Apolymer14516073.91UniProt (P0CX29)
Pfam (PF00164)		Saccharomyces cerevisiaeRP37,S28,Small ribosomal subunit protein uS12-A,YS14
26Z
(Y)		40S ribosomal protein S24-Apolymer13515362.81UniProt (P0CX31)
Pfam (PF01282)		Saccharomyces cerevisiaeRP50,Small ribosomal subunit protein eS24-A
27AA
(Z)		40S ribosomal protein S25-Apolymer10511780.01UniProt (Q3E792)
Pfam (PF03297)		Saccharomyces cerevisiaeRP45,S31,Small ribosomal subunit protein eS25-A,YS23
28BA
(a)		40S ribosomal protein S26-Apolymer11913538.91UniProt (P39938)
Pfam (PF01283)		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS26-A
29CA
(b)		40S ribosomal protein S27-Apolymer828893.41UniProt (P35997)
Pfam (PF01667)		Saccharomyces cerevisiaeRP61,Small ribosomal subunit protein eS27-A,YS20
30DA
(d)		40S ribosomal protein S29-Apolymer566675.71UniProt (P41057)
Pfam (PF00253)		Saccharomyces cerevisiaeS36,Small ribosomal subunit protein uS14-A,YS29
31EA
(e)		40S ribosomal protein S30-Apolymer637137.51UniProt (P0CX33)
Pfam (PF04758)		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS30-A
32FA
(f)		Ubiquitin-40S ribosomal protein S31polymer15217254.21UniProt (P05759)
Pfam (PF00240)
Pfam (PF01599)		Saccharomyces cerevisiae
33GA
(g)		Guanine nucleotide-binding protein subunit beta-like proteinpolymer31934841.21UniProt (P38011)
Pfam (PF00400)		Saccharomyces cerevisiaeReceptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
34HA
(c)		40S ribosomal protein S28-Bpolymer677578.81UniProt (P0C0X0)
Pfam (PF01200)		Saccharomyces cerevisiaeS33,Small ribosomal subunit protein eS28-B,YS27
35IA
(4)		5S rRNApolymer12138951.11GenBank (1329886537)Saccharomyces cerevisiae
36JA
(3)		5.8S rRNApolymer15850682.91GenBank (1331532632)Saccharomyces cerevisiae
37KA
(h)		60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)		Saccharomyces cerevisiaeL5,Large ribosomal subunit protein uL2-A,RP8,YL6
38LA
(i)		60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)		Saccharomyces cerevisiaeLarge ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
39MA
(j)		60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)		Saccharomyces cerevisiaeL2,Large ribosomal subunit protein uL4-A,RP2,YL2
40NA
(k)		60S ribosomal protein L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)		Saccharomyces cerevisiaeL1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
41OA
(l)		60S ribosomal protein L6-Bpolymer16718516.71UniProt (P05739)
Pfam (PF01159)		Saccharomyces cerevisiaeL17,Large ribosomal subunit protein eL6-B,RP18,YL16
42PA
(m)		60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)		Saccharomyces cerevisiaeL6,Large ribosomal subunit protein uL30-A,RP11,YL8
43QA
(n)		60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)		Saccharomyces cerevisiaeL4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
44RA
(o)		60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)		Saccharomyces cerevisiaeL8,Large ribosomal subunit protein uL6-A,RP24,YL11
45SA
(p)		60S ribosomal protein L10polymer22125410.51UniProt (P41805)
Pfam (PF00252)		Saccharomyces cerevisiaeL9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
46TA
(q)		60S ribosomal protein L11-Apolymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)		Saccharomyces cerevisiaeL16,Large ribosomal subunit protein uL5-A,RP39,YL22
47UA
(r)		60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL13-A
48VA
(s)		60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL14-A
49WA
(t)		60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)		Saccharomyces cerevisiaeL13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
50XA
(u)		60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)		Saccharomyces cerevisiaeL13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
51YA
(v)		60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)		Saccharomyces cerevisiaeL20A,Large ribosomal subunit protein uL22-A,YL17
52ZA
(w)		60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL18-A,RP28
53AB
(x)		60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)		Saccharomyces cerevisiaeL23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
54BB
(y)		60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)		Saccharomyces cerevisiaeL18a,Large ribosomal subunit protein eL20-A
55CB
(z)		60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL21-A
56DB
(au)		60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)		Saccharomyces cerevisiaeL1c,Large ribosomal subunit protein eL22-A,RP4,YL31
57EB
(AB)		60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)		Saccharomyces cerevisiaeL17a,Large ribosomal subunit protein uL14-A,YL32
58FB
(at)		60S ribosomal protein L24-Apolymer15517633.71UniProt (P04449)
Pfam (PF01246)		Saccharomyces cerevisiaeL30,Large ribosomal subunit protein eL24-A,RP29,YL21
59GB
(as)		60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)		Saccharomyces cerevisiaeLarge ribosomal subunit protein uL23,RP16L,YL25,YP42'
60HB
(ar)		60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)		Saccharomyces cerevisiaeL33,Large ribosomal subunit protein uL24-A,YL33
61IB
(aq)		60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL27-A
62JB
(ap)		60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)		Saccharomyces cerevisiaeL27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
63KB
(ao)		60S ribosomal protein L29polymer596691.91UniProt (P05747)
Pfam (PF01779)		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL29,YL43
64LB
(an)		60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)		Saccharomyces cerevisiaeL32,Large ribosomal subunit protein eL30,RP73,YL38
65MB
(am)		60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)		Saccharomyces cerevisiaeL34,Large ribosomal subunit protein eL31-A,YL28
66NB
(al)		60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL32
67OB
(ak)		60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)		Saccharomyces cerevisiaeL37,Large ribosomal subunit protein eL33-A,RP47,YL37
68PB
(aj)		60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL34-A
69QB
(ai)		60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)		Saccharomyces cerevisiaeLarge ribosomal subunit protein uL29-A
70RB
(ah)		60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)		Saccharomyces cerevisiaeL39,Large ribosomal subunit protein eL36-A,YL39
71SB
(ag)		60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)		Saccharomyces cerevisiaeL43,Large ribosomal subunit protein eL37-A,YL35,YP55
72TB
(af)		60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL38
73UB
(ae)		60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)		Saccharomyces cerevisiaeL46,Large ribosomal subunit protein eL39,YL40
74VB
(ad)		Ubiquitin-60S ribosomal protein L40polymer12814583.11UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)		Saccharomyces cerevisiae
75WB
(ac)		L41-Apolymer253354.21Saccharomyces cerevisiae
76XB
(ab)		60S ribosomal protein L42-Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)		Saccharomyces cerevisiaeL41,Large ribosomal subunit protein eL42-A,YL27,YP44
77YB
(aa)		60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)		Saccharomyces cerevisiaeL37a,Large ribosomal subunit protein eL43-A,YL35
78ZB
(1)		Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNApolymer33961097493.91REF (831416134)Saccharomyces cerevisiae
79AC
(5)		mRNApolymer216799.11Saccharomyces cerevisiae
80BC
(NC)		Uncharacterized protein YEL057Cpolymer23327272.61UniProt (P39983)Saccharomyces cerevisiae
81CC
(6)		tRNApolymer7624469.51Saccharomyces cerevisiae
82AD, AE, AF, BD, BE...
(2, E, F, T, 1...)		MAGNESIUM IONnon-polymer24.387Chemie (MG)
83KF, LF, MF, NF, OF...
(d, f, aj, ag, ad...)		ZINC IONnon-polymer65.47Chemie (ZN)
Sequence modifications
l: 2 - 176 (UniProt: P05739)
PDBExternal DatabaseDetails
Ala 113Lys 113conflict
Ala 114Lys 114conflict
Ala 115Glu 115conflict
Ala 116Lys 116conflict
Ala 117Lys 117conflict
Ala 118Glu 118conflict
-Asn 120deletion
-Leu 121deletion
-Phe 122deletion
-Pro 123deletion
-Glu 124deletion
-Gln 125deletion
-Gln 126deletion
-Thr 127deletion
Ala 120Lys 128conflict
Ala 132Thr 132conflict
Ile 146Leu 146conflict
Met 173Leu 173conflict
at: 1 - 155 (UniProt: P04449)
PDBExternal DatabaseDetails
Gln 104Asn 104conflict
Gln 109Leu 109conflict
Asp 112Asn 112conflict
Ala 119Glu 119conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains81
Total formula weight3162575.9
Non-Polymers*Number of molecules94
Total formula weight2572.4
All*Total formula weight3165148.3
*Water molecules are not included.

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PDB entries from 2025-06-11

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