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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6SNT

Yeast 80S ribosome stalled on SDD1 mRNA.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
12Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNApolymer1800579761.91REF (831416138)Saccharomyces cerevisiae
2A40S ribosomal protein S0-Apolymer25228051.31UniProt (P32905)
Pfam (PF00318)
In PDB		Saccharomyces cerevisiaeNucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
3B40S ribosomal protein S1-Apolymer25528798.51UniProt (P33442)
Pfam (PF01015)
In PDB		Saccharomyces cerevisiaeRP10A,Small ribosomal subunit protein eS1-A
4P40S ribosomal protein S15polymer14216031.91UniProt (Q01855)
Pfam (PF00203)
In PDB		Saccharomyces cerevisiaeRIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
5C40S ribosomal protein S2polymer25427490.81UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Saccharomyces cerevisiaeOmnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
6D40S ribosomal protein S3polymer24026542.81UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Saccharomyces cerevisiaeRP13,Small ribosomal subunit protein uS3,YS3
7E40S ribosomal protein S4-Apolymer26129469.31UniProt (P0CX35)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Pfam (PF08071)
In PDB		Saccharomyces cerevisiaeRP5,S7,Small ribosomal subunit protein eS4-A,YS6
8F40S ribosomal protein S5polymer22525072.61UniProt (P26783)
Pfam (PF00177)
In PDB		Saccharomyces cerevisiaeRP14,S2,Small ribosomal subunit protein uS7,YS8
9G40S ribosomal protein S6-Apolymer23627054.51UniProt (P0CX37)
Pfam (PF01092)
In PDB		Saccharomyces cerevisiaeRP9,S10,Small ribosomal subunit protein eS6-A,YS4
10H40S ribosomal protein S7-Apolymer19021658.21UniProt (P26786)
Pfam (PF01251)
In PDB		Saccharomyces cerevisiaeRP30,RP40,Small ribosomal subunit protein eS7-A
11I40S ribosomal protein S8-Apolymer20022537.81UniProt (P0CX39)
Pfam (PF01201)
In PDB		Saccharomyces cerevisiaeRP19,S14,Small ribosomal subunit protein eS8-A,YS9
12J40S ribosomal protein S9-Apolymer19722487.91UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Saccharomyces cerevisiaeRP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
13K40S ribosomal protein S10-Apolymer10512757.41UniProt (Q08745)
Pfam (PF03501)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS10-A
14L40S ribosomal protein S11-Apolymer15617785.91UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Saccharomyces cerevisiaeRP41,S18,Small ribosomal subunit protein uS17-A,YS12
15M40S ribosomal protein S12polymer14315488.61UniProt (P48589)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS12
16N40S ribosomal protein S13polymer15117059.91UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Saccharomyces cerevisiaeS27a,Small ribosomal subunit protein uS15,YS15
17O40S ribosomal protein S14-Apolymer13714562.71UniProt (P06367)
Pfam (PF00411)
In PDB		Saccharomyces cerevisiaeRP59A,Small ribosomal subunit protein uS11-A
18Q40S ribosomal protein S16-Apolymer14315877.51UniProt (P0CX51)
Pfam (PF00380)
In PDB		Saccharomyces cerevisiaeRP61R,Small ribosomal subunit protein uS9-A
19R40S ribosomal protein S17-Bpolymer13615835.41UniProt (P14127)
Pfam (PF00833)
In PDB		Saccharomyces cerevisiaeRP51B,Small ribosomal subunit protein eS17-B
20S40S ribosomal protein S18-Apolymer14617071.61UniProt (P0CX55)
Pfam (PF00416)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein uS13-A
21T40S ribosomal protein S19-Apolymer14415942.11UniProt (P07280)
Pfam (PF01090)
In PDB		Saccharomyces cerevisiaeRP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
22U40S ribosomal protein S20polymer12113929.01UniProt (P38701)
Pfam (PF00338)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein uS10
23V40S ribosomal protein S21-Apolymer879758.81UniProt (P0C0V8)
Pfam (PF01249)
In PDB		Saccharomyces cerevisiaeS26,Small ribosomal subunit protein eS21-A,YS25
24W40S ribosomal protein S22-Apolymer13014650.11UniProt (P0C0W1)
Pfam (PF00410)
In PDB		Saccharomyces cerevisiaeRP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
25X40S ribosomal protein S23-Apolymer14516073.91UniProt (P0CX29)
Pfam (PF00164)
In PDB		Saccharomyces cerevisiaeRP37,S28,Small ribosomal subunit protein uS12-A,YS14
26Y40S ribosomal protein S24-Apolymer13515362.81UniProt (P0CX31)
Pfam (PF01282)
In PDB		Saccharomyces cerevisiaeRP50,Small ribosomal subunit protein eS24-A
27Z40S ribosomal protein S25-Apolymer10511780.01UniProt (Q3E792)
Pfam (PF03297)
In PDB		Saccharomyces cerevisiaeRP45,S31,Small ribosomal subunit protein eS25-A,YS23
28a40S ribosomal protein S26-Apolymer11913538.91UniProt (P39938)
Pfam (PF01283)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS26-A
29b40S ribosomal protein S27-Apolymer828893.41UniProt (P35997)
Pfam (PF01667)
In PDB		Saccharomyces cerevisiaeRP61,Small ribosomal subunit protein eS27-A,YS20
30d40S ribosomal protein S29-Apolymer566675.71UniProt (P41057)
Pfam (PF00253)
In PDB		Saccharomyces cerevisiaeS36,Small ribosomal subunit protein uS14-A,YS29
31e40S ribosomal protein S30-Apolymer637137.51UniProt (P0CX33)
Pfam (PF04758)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS30-A
32fUbiquitin-40S ribosomal protein S31polymer15217254.21UniProt (P05759)
Pfam (PF00240)
Pfam (PF01599)
In PDB		Saccharomyces cerevisiae
33gGuanine nucleotide-binding protein subunit beta-like proteinpolymer31934841.21UniProt (P38011)
Pfam (PF00400)
In PDB		Saccharomyces cerevisiaeReceptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
34c40S ribosomal protein S28-Bpolymer677578.81UniProt (P0C0X0)
Pfam (PF01200)
In PDB		Saccharomyces cerevisiaeS33,Small ribosomal subunit protein eS28-B,YS27
3545S rRNApolymer12138951.11GenBank (1329886537)Saccharomyces cerevisiae
3635.8S rRNApolymer15850682.91GenBank (1331532632)Saccharomyces cerevisiae
37h60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Saccharomyces cerevisiaeL5,Large ribosomal subunit protein uL2-A,RP8,YL6
38i60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
39j60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiaeL2,Large ribosomal subunit protein uL4-A,RP2,YL2
40k60S ribosomal protein L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Saccharomyces cerevisiaeL1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
41l60S ribosomal protein L6-Bpolymer16718516.71UniProt (P05739)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiaeL17,Large ribosomal subunit protein eL6-B,RP18,YL16
42m60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiaeL6,Large ribosomal subunit protein uL30-A,RP11,YL8
43n60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiaeL4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
44o60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiaeL8,Large ribosomal subunit protein uL6-A,RP24,YL11
45p60S ribosomal protein L10polymer22125410.51UniProt (P41805)
Pfam (PF00252)
In PDB		Saccharomyces cerevisiaeL9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
46q60S ribosomal protein L11-Apolymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Saccharomyces cerevisiaeL16,Large ribosomal subunit protein uL5-A,RP39,YL22
47r60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL13-A
48s60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL14-A
49t60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiaeL13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
50u60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiaeL13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
51v60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiaeL20A,Large ribosomal subunit protein uL22-A,YL17
52w60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL18-A,RP28
53x60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
In PDB		Saccharomyces cerevisiaeL23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
54y60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiaeL18a,Large ribosomal subunit protein eL20-A
55z60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL21-A
56au60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
In PDB		Saccharomyces cerevisiaeL1c,Large ribosomal subunit protein eL22-A,RP4,YL31
57AB60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiaeL17a,Large ribosomal subunit protein uL14-A,YL32
58at60S ribosomal protein L24-Apolymer15517633.71UniProt (P04449)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiaeL30,Large ribosomal subunit protein eL24-A,RP29,YL21
59as60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein uL23,RP16L,YL25,YP42'
60ar60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiaeL33,Large ribosomal subunit protein uL24-A,YL33
61aq60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL27-A
62ap60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiaeL27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
63ao60S ribosomal protein L29polymer596691.91UniProt (P05747)
Pfam (PF01779)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL29,YL43
64an60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiaeL32,Large ribosomal subunit protein eL30,RP73,YL38
65am60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiaeL34,Large ribosomal subunit protein eL31-A,YL28
66al60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL32
67ak60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiaeL37,Large ribosomal subunit protein eL33-A,RP47,YL37
68aj60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL34-A
69ai60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein uL29-A
70ah60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiaeL39,Large ribosomal subunit protein eL36-A,YL39
71ag60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiaeL43,Large ribosomal subunit protein eL37-A,YL35,YP55
72af60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL38
73ae60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)
In PDB		Saccharomyces cerevisiaeL46,Large ribosomal subunit protein eL39,YL40
74adUbiquitin-60S ribosomal protein L40polymer12814583.11UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Saccharomyces cerevisiae
75acL41-Apolymer253354.21Saccharomyces cerevisiae
76ab60S ribosomal protein L42-Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)
In PDB		Saccharomyces cerevisiaeL41,Large ribosomal subunit protein eL42-A,YL27,YP44
77aa60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
In PDB		Saccharomyces cerevisiaeL37a,Large ribosomal subunit protein eL43-A,YL35
781Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNApolymer33961097493.91REF (831416134)Saccharomyces cerevisiae
795mRNApolymer216799.11Saccharomyces cerevisiae
80NCUncharacterized protein YEL057Cpolymer23327272.61UniProt (P39983)
In PDB		Saccharomyces cerevisiae
816tRNApolymer7624469.51Saccharomyces cerevisiae
822, E, F, T, 1...MAGNESIUM IONnon-polymer24.387Chemie (MG)
83d, f, aj, ag, ad...ZINC IONnon-polymer65.47Chemie (ZN)
Sequence modifications
l: 2 - 176 (UniProt: P05739)
PDBExternal DatabaseDetails
Ala 113Lys 113conflict
Ala 114Lys 114conflict
Ala 115Glu 115conflict
Ala 116Lys 116conflict
Ala 117Lys 117conflict
Ala 118Glu 118conflict
-Asn 120deletion
-Leu 121deletion
-Phe 122deletion
-Pro 123deletion
-Glu 124deletion
-Gln 125deletion
-Gln 126deletion
-Thr 127deletion
Ala 120Lys 128conflict
Ala 132Thr 132conflict
Ile 146Leu 146conflict
Met 173Leu 173conflict
at: 1 - 155 (UniProt: P04449)
PDBExternal DatabaseDetails
Gln 104Asn 104conflict
Gln 109Leu 109conflict
Asp 112Asn 112conflict
Ala 119Glu 119conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains81
Total formula weight3162575.9
Non-Polymers*Number of molecules94
Total formula weight2572.4
All*Total formula weight3165148.3
*Water molecules are not included.

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PDB entries from 2024-07-24

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