6S0S
The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel, ribostamycin B and 2-oxoglutarate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Kanamycin B dioxygenase | polymer | 288 | 31841.1 | 6 | UniProt (Q6L732) Pfam (PF05721) | Streptomyces kanamyceticus | Kanamycin biosynthesis protein J |
| 2 | G, J, N, R, U... (A, B, C, D, E...) | NICKEL (II) ION | non-polymer | 58.7 | 6 | Chemie (NI) | |||
| 3 | H, K, O, S, V... (A, B, C, D, E...) | 2-OXOGLUTARIC ACID | non-polymer | 146.1 | 6 | Chemie (AKG) | |||
| 4 | AA, I, L, P, T... (F, A, B, C, D...) | RIBOSTAMYCIN | non-polymer | 454.5 | 6 | Chemie (RIO) | |||
| 5 | M, Q, X (B, C, E) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 6 | BA, CA, DA, EA, FA... (A, B, C, D, E...) | water | water | 18.0 | 462 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 1 - 285 (UniProt: Q6L732)
| PDB | External Database | Details |
|---|---|---|
| Ser -2 | - | expression tag |
| Asn -1 | - | expression tag |
| Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 191046.6 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 4061.9 | |
| All* | Total formula weight | 195108.5 |
