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6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1UAPeriodic tryptophan protein 2-like proteinpolymer904100817.51UniProt (G0SF93)
Pfam (PF00400)
Pfam (PF04003)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
2UBUtp2polymer907103960.71UniProt (G0SDW0)
Pfam (PF04147)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
3UCUtp3polymer64873214.61UniProt (G0S4H3)
Pfam (PF04000)
Pfam (PF09368)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
4UDUtp4polymer88497696.51UniProt (G0SCT7)
Pfam (PF00400)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
5UFUtp6polymer41446924.81UniProt (G0S387)
Pfam (PF08640)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
6UGUtp7polymer55863629.41UniProt (G0RZ99)
Pfam (PF00400)
Pfam (PF08149)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
7UJUTP10polymer1802198508.41UniProt (G0S5L1)
Pfam (PF12397)
Pfam (PF08146)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
8UKU3 small nucleolar RNA-associated protein 11polymer27031379.71UniProt (G0SF32)
Pfam (PF03998)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)U3 snoRNA-associated protein 11
9ULUtp12polymer962107573.01UniProt (G0RZL9)
Pfam (PF00400)
Pfam (PF04003)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
10UMUtp13polymer912100430.41UniProt (G0SG95)
Pfam (PF00400)
Pfam (PF08625)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
11UNUtp14polymer938104741.41UniProt (G0S8Y4)
Pfam (PF04615)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
12UOUtp15polymer55760524.11UniProt (G0SEI5)
Pfam (PF09384)
Pfam (PF00400)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
13UQUtp17polymer960105039.71UniProt (G0SCS8)
Pfam (PF00400)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
14URUtp18polymer61869055.11UniProt (G0SBN9)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
15UUUtp21polymer1049115122.01UniProt (G0S872)
Pfam (PF00400)
Pfam (PF04192)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
16UXUtp24polymer19322136.01Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
17UZUtp30polymer39143700.51UniProt (G0S7X0)
Pfam (PF00687)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
18CA, CBNop1polymer31332960.82UniProt (G0SGY2)
Pfam (PF01269)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
19CCNop56polymer52357830.71UniProt (G0S2U4)
Pfam (PF08156)
Pfam (PF01798)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
20CDNop58polymer58264292.11UniProt (G0RYF6)
Pfam (PF08156)
Pfam (PF01798)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
21CE, CFSnu13polymer12713831.92UniProt (G0SGM0)
Pfam (PF01248)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
22CGRrp9polymer63069610.41UniProt (G0SG51)
Pfam (PF00400)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
23CHRNA 3'-terminal phosphate cyclase-like proteinpolymer41143399.81UniProt (G0S0B1)
Pfam (PF01137)
Pfam (PF05189)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
24CIBms1polymer1163134172.31UniProt (G0S445)
Pfam (PF08142)
Pfam (PF04950)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
25CJImp3polymer18321802.41UniProt (G0SDL4)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
26CKImp4polymer29734216.31UniProt (G0SE90)
Pfam (PF04427)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
27CLMpp10polymer78586082.11UniProt (G0S9I7)
Pfam (PF04006)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
28CMSof1polymer44650869.81UniProt (G0RY94)
Pfam (PF00400)
Pfam (PF04158)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
29CN, COEmg1polymer25227936.22UniProt (G0SAY9)
Pfam (PF03587)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
30CPKRR1 small subunit processome componentpolymer32237500.81UniProt (G0S3V7)
Pfam (PF17903)
Pfam (PF21800)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)KRR-R motif-containing protein 1
31CQPre-rRNA-processing protein PNO1polymer25928715.01UniProt (G0S3T2)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
32CR, CSKre33polymer1073119795.12UniProt (G0S273)
Pfam (PF08351)
Pfam (PF05127)
Pfam (PF13718)
Pfam (PF13725)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
33CTFcf2polymer20322569.11UniProt (G0S4E3)
Pfam (PF08698)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
34Ca40S ribosomal protein S1polymer25529245.21UniProt (G0S7T8)
Pfam (PF01015)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
35Cb40S ribosomal protein S4polymer26429800.81UniProt (G0S1A6)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
36Cc40S ribosomal protein s5-like proteinpolymer21223679.21UniProt (G0S1Z0)
Pfam (PF00177)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
37Cd40S ribosomal protein S6polymer23927490.11UniProt (G0RY43)
Pfam (PF01092)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
38Ce40S ribosomal protein S7polymer20323084.71UniProt (G0S8C4)
Pfam (PF01251)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
39Cf40S ribosomal protein S8polymer20223102.41UniProt (G0RY45)
Pfam (PF01201)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
40Cg40S ribosomal protein s9-like proteinpolymer19022029.81UniProt (G0S0Z4)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
41Ch40S ribosomal protein S13-like proteinpolymer15116912.91UniProt (G0RZM9)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
42Ci40S ribosomal protein S14-like proteinpolymer15016071.51UniProt (G0SFL1)
Pfam (PF00411)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
43Cj40S ribosomal protein S16-like proteinpolymer14315962.81UniProt (G0SBR7)
Pfam (PF00380)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
44Ck40S ribosomal protein S11-like proteinpolymer16118698.21UniProt (G0SF00)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
45Cm40S ribosomal protein S22-like proteinpolymer13014905.51UniProt (G0SHI0)
Pfam (PF00410)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
46Cn40S ribosomal protein s23-like proteinpolymer14515934.71UniProt (G0RY17)
Pfam (PF00164)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
47Co40S ribosomal protein S24polymer13615535.31UniProt (P0CU28)
Pfam (PF01282)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
48Cp40S ribosomal protein S28-like proteinpolymer687742.01UniProt (G0S9M9)
Pfam (PF01200)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
49CUFaf1polymer31134576.61UniProt (G0S5F1)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
50C135S ribosomal RNApolymer2352758475.31Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
51C2U3 snoRNApolymer23073966.51Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
52UVU3 small nucleolar RNA-associated protein 22polymer1171131105.41UniProt (G0S2E0)
Pfam (PF03813)
Pfam (PF17403)
Pfam (PF17404)
Pfam (PF17405)
Pfam (PF17406)
Pfam (PF17407)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
53CVRrp7polymer32236366.61UniProt (G0SDB8)
Pfam (PF17799)
Pfam (PF12923)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
54CWRibosome biogenesis protein ENP2polymer66875833.81UniProt (G0S902)
Pfam (PF08159)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
55UTUtp20polymer2612295278.91UniProt (G0SHP3)
Pfam (PF07539)
Pfam (PF20416)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
56UHUtp8polymer930102421.11UniProt (P0CT47)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
57UE, UIUtp5polymer41044663.42UniProt (G0RYX2)
Pfam (PF04003)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
58USNoc4polymer54963331.71UniProt (G0RZL4)
Pfam (PF03914)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
59ClRps18polymer15617826.71UniProt (G0S6J7)
Pfam (PF00416)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
60CXEnp1polymer48054319.61UniProt (G0S5J4)
Pfam (PF05291)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
61CYU3 small nucleolar ribonucleoprotein protein lcp5-like proteinpolymer38142625.41UniProt (G0S7Z2)
Pfam (PF04000)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
62CZBfr2polymer60969040.61UniProt (G0SAJ6)
Pfam (PF13339)
Pfam (PF08164)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
63UPUtp16polymer36440726.01UniProt (G0S612)
Pfam (PF08297)
In PDB
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
64UXZINC IONnon-polymer65.41Chemie (ZN)
65CIGUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
66CIMAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains68
Total formula weight4669978.6
Non-Polymers*Number of molecules3
Total formula weight612.9
All*Total formula weight4670591.5
*Water molecules are not included.

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PDB entries from 2024-03-27

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