6ROJ
Cryo-EM structure of the activated Drs2p-Cdc50p
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Probable phospholipid-transporting ATPase DRS2,Oxaloacetate decarboxylase alpha chain | polymer | 1465 | 164240.4 | 1 | UniProt (P39524) UniProt (P13187) Pfam (PF16209) Pfam (PF13246) Pfam (PF16212) Pfam (PF00364) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | |
2 | C | Cell division control protein 50 | polymer | 413 | 47371.8 | 1 | UniProt (P25656) Pfam (PF03381) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | |
3 | B, E | beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 2 | In PDB GlyTouCan (G31886NL) | |||
4 | D | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
5 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
6 | A | (2R)-1-{[(R)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy)propan-2-yl (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate | non-polymer | 967.1 | 1 | Chemie (2Y5) | |||
7 | water | water | 18.0 | 2 | Chemie (HOH) |
Sequence modifications
A: 1 - 1361 (UniProt: P39524)
A: 1380 - 1465 (UniProt: P13187)
C: 1 - 391 (UniProt: P25656)
PDB | External Database | Details |
---|---|---|
Ser 1247 | - | insertion |
Leu 1248 | - | insertion |
Val 1249 | - | insertion |
Pro 1250 | - | insertion |
Arg 1251 | - | insertion |
Gly 1252 | - | insertion |
Gly 1362 | - | linker |
Gly 1363 | - | linker |
Gly 1364 | - | linker |
Gly 1365 | - | linker |
Leu 1366 | - | linker |
Val 1367 | - | linker |
Pro 1368 | - | linker |
Arg 1369 | - | linker |
Gly 1370 | - | linker |
Ser 1371 | - | linker |
Gly 1372 | - | linker |
Gly 1373 | - | linker |
Thr 1374 | - | linker |
Ala 1375 | - | linker |
Ala 1376 | - | linker |
Ala 1377 | - | linker |
Pro 1378 | - | linker |
Gly 1379 | - | linker |
C: 1 - 391 (UniProt: P25656)
PDB | External Database | Details |
---|---|---|
Gly 392 | - | expression tag |
Gly 393 | - | expression tag |
Gly 394 | - | expression tag |
Gly 395 | - | expression tag |
Leu 396 | - | expression tag |
Val 397 | - | expression tag |
Pro 398 | - | expression tag |
Arg 399 | - | expression tag |
Gly 400 | - | expression tag |
Ser 401 | - | expression tag |
Gly 402 | - | expression tag |
Gly 403 | - | expression tag |
His 404 | - | expression tag |
His 405 | - | expression tag |
His 406 | - | expression tag |
His 407 | - | expression tag |
His 408 | - | expression tag |
His 409 | - | expression tag |
His 410 | - | expression tag |
His 411 | - | expression tag |
His 412 | - | expression tag |
His 413 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 211612.2 | |
Branched | Number of molecules | 3 |
Total formula weight | 1921.8 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 991.4 | |
All* | Total formula weight | 214525.3 |