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6PKG

Zebrafish N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase (NAGPA) catalytic domain auto-inhibited by pro-peptide

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidasepolymer32135633.72UniProt (F1QSF9)
Pfam (PF09992)
Danio rerio (Zebrafish)
2C
(C)
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched1057.01In PDB
GlyTouCan (G82348BZ)
3D, JA, KA
(A, B)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.23Chemie (NAG)
4AB, BB, CB, DB, E...
(B, A)
IODIDE IONnon-polymer126.948Chemie (IOD)
5AA, BA, CA, DA, EA...
(A, B)
molecular iodinenon-polymer253.815Chemie (I2I)
6IA
(A)
HEXAETHYLENE GLYCOLnon-polymer282.31Chemie (P6G)
7SB, TB
(A, B)
waterwater18.0257Chemie (HOH)
Sequence modifications
A, B: 26 - 336 (UniProt: F1QSF9)
PDBExternal DatabaseDetails
Asp 16-expression tag
Arg 17-expression tag
His 18-expression tag
His 19-expression tag
His 20-expression tag
His 21-expression tag
His 22-expression tag
His 23-expression tag
Lys 24-expression tag
Leu 25-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight71267.5
BranchedNumber of molecules1
Total formula weight1057.0
Non-Polymers*Number of molecules67
Total formula weight10844.5
All*Total formula weight83168.9
*Water molecules are not included.

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PDB entries from 2025-07-23

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