6PFV
Structure of S. venezuelae RisG-WhiG-c-di-GMP complex: orthorhombic crystal form
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E (T, B, E) | AmfC protein | polymer | 176 | 19992.4 | 3 | UniProt (F2RFR7) Pfam (PF22802) | Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) | RsiG |
| 2 | B, D, F (A, D, G) | RNA polymerase sigma factor | polymer | 278 | 30809.9 | 3 | UniProt (A0A3N1Q704) | Streptomyces sp. PanSC19 | WhiG |
| 3 | G, H, I, J, K... (T, B, E) | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) | non-polymer | 690.4 | 6 | Chemie (C2E) |
Sequence modifications
T, B, E: 26 - 199 (UniProt: F2RFR7)
A, D, G: 1 - 278 (UniProt: A0A3N1Q704)
| PDB | External Database | Details |
|---|---|---|
| Gly 24 | - | expression tag |
| Ser 25 | - | expression tag |
| Gly 91 | Pro 91 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Glu 38 | Asp 38 | engineered mutation |
| Val 97 | Ile 97 | engineered mutation |
| Gly 144 | Arg 144 | engineered mutation |
| Thr 150 | Ser 150 | engineered mutation |
| Ser 159 | Thr 159 | engineered mutation |
| Asp 162 | Glu 162 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 152406.7 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 4142.5 | |
| All* | Total formula weight | 156549.1 |
