6PFV
Structure of S. venezuelae RisG-WhiG-c-di-GMP complex: orthorhombic crystal form
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0003677 | molecular_function | DNA binding |
A | 0003700 | molecular_function | DNA-binding transcription factor activity |
A | 0003899 | molecular_function | DNA-directed 5'-3' RNA polymerase activity |
A | 0006352 | biological_process | DNA-templated transcription initiation |
A | 0006355 | biological_process | regulation of DNA-templated transcription |
A | 0016987 | molecular_function | sigma factor activity |
A | 2000142 | biological_process | regulation of DNA-templated transcription initiation |
D | 0000166 | molecular_function | nucleotide binding |
D | 0003677 | molecular_function | DNA binding |
D | 0003700 | molecular_function | DNA-binding transcription factor activity |
D | 0003899 | molecular_function | DNA-directed 5'-3' RNA polymerase activity |
D | 0006352 | biological_process | DNA-templated transcription initiation |
D | 0006355 | biological_process | regulation of DNA-templated transcription |
D | 0016987 | molecular_function | sigma factor activity |
D | 2000142 | biological_process | regulation of DNA-templated transcription initiation |
G | 0000166 | molecular_function | nucleotide binding |
G | 0003677 | molecular_function | DNA binding |
G | 0003700 | molecular_function | DNA-binding transcription factor activity |
G | 0003899 | molecular_function | DNA-directed 5'-3' RNA polymerase activity |
G | 0006352 | biological_process | DNA-templated transcription initiation |
G | 0006355 | biological_process | regulation of DNA-templated transcription |
G | 0016987 | molecular_function | sigma factor activity |
G | 2000142 | biological_process | regulation of DNA-templated transcription initiation |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 13 |
Details | binding site for residue C2E T 201 |
Chain | Residue |
A | LYS57 |
T | GLU162 |
T | SER166 |
T | ARG169 |
T | C2E202 |
T | ARG71 |
T | GLN75 |
T | ILE78 |
T | ASP79 |
T | ASP105 |
T | SER108 |
T | HIS110 |
T | SER112 |
site_id | AC2 |
Number of Residues | 17 |
Details | binding site for residue C2E T 202 |
Chain | Residue |
A | GLY61 |
A | ARG62 |
A | VAL65 |
T | GLU64 |
T | SER68 |
T | ARG71 |
T | ARG72 |
T | ASP105 |
T | VAL106 |
T | PRO107 |
T | SER108 |
T | SER112 |
T | ARG115 |
T | ARG169 |
T | GLN173 |
T | ASP177 |
T | C2E201 |
site_id | AC3 |
Number of Residues | 12 |
Details | binding site for residue C2E B 201 |
Chain | Residue |
B | ARG71 |
B | GLN75 |
B | ILE78 |
B | ASP79 |
B | SER108 |
B | HIS110 |
B | SER112 |
B | GLU162 |
B | SER166 |
B | ARG169 |
B | C2E202 |
D | LYS57 |
site_id | AC4 |
Number of Residues | 17 |
Details | binding site for residue C2E B 202 |
Chain | Residue |
B | GLN61 |
B | GLU64 |
B | SER68 |
B | ARG71 |
B | ARG72 |
B | ASP105 |
B | VAL106 |
B | SER108 |
B | SER112 |
B | ARG115 |
B | ARG169 |
B | GLN173 |
B | ASP177 |
B | C2E201 |
D | GLY61 |
D | ARG62 |
D | VAL65 |
site_id | AC5 |
Number of Residues | 12 |
Details | binding site for residue C2E E 201 |
Chain | Residue |
E | ARG71 |
E | GLN75 |
E | ILE78 |
E | ASP79 |
E | ARG82 |
E | SER108 |
E | HIS110 |
E | GLU162 |
E | SER166 |
E | ARG169 |
E | C2E202 |
G | LYS57 |
site_id | AC6 |
Number of Residues | 16 |
Details | binding site for residue C2E E 202 |
Chain | Residue |
E | GLU64 |
E | SER68 |
E | ARG71 |
E | ARG72 |
E | ASP105 |
E | VAL106 |
E | SER108 |
E | SER112 |
E | ARG115 |
E | ARG169 |
E | GLN173 |
E | ALA176 |
E | ASP177 |
E | C2E201 |
G | ARG62 |
G | VAL65 |
Functional Information from PROSITE/UniProt