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6PFV

Structure of S. venezuelae RisG-WhiG-c-di-GMP complex: orthorhombic crystal form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2017-10-14
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1
Spacegroup nameP 2 21 21
Unit cell lengths79.847, 97.339, 204.580
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution87.897 - 3.000
R-factor0.2178
Rwork0.214
R-free0.27840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6pfj
RMSD bond length0.007
RMSD bond angle0.975
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]87.8973.040
High resolution limit [Å]2.9902.990
Rmerge0.0980.998
Rpim0.0530.653
Number of reflections598282129
<I/σ(I)>8.91.2
Completeness [%]99.199.1
Redundancy43.2
CC(1/2)0.9970.447
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2980.1 M Tris Bicine pH 8.5, 0.03 M sodium nitrate, 0.03 M sodium phosphate, 0.03 M ammonium sulfate, 9% MPD, 10% PEG 1000 and 15% PEG 3350

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