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6O3R

Crystal Structure of NDM-1 D199N with Compound 7

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Carbapenem Hydrolyzing Class B Metallo beta lactamase NDM-1polymer23324601.71UniProt (E9NWK5)
UniProt (by SIFTS) (C7C422)
Klebsiella pneumoniaeMetallo beta-lactamase,Metallo-beta-lactamase NDM-1,NDM-1 metallo-beta-lactamase,NDM1 metallo-beta-lactamase,New Delhi Metallo carbapenemase-1,New Delhi metallo-beta-lactamase NDM-1,New Delhi metallo-beta-lactamse 1,Subclass B1 metallo-beta-lactamase NDM-1
2B, C
(A)
ZINC IONnon-polymer65.42Chemie (ZN)
3D
(A)
[(5-methoxy-7-methyl-2-oxo-2H-1-benzopyran-4-yl)methyl]phosphonic acidnon-polymer284.21Chemie (XJE)
4E
(A)
waterwater18.0296Chemie (HOH)
Sequence modifications
A: 42 - 270 (UniProt: E9NWK5)
PDBExternal DatabaseDetails
Gly 38-expression tag
Ser 39-expression tag
His 40-expression tag
Met 41-expression tag
Asn 199Asp 199conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight24601.7
Non-Polymers*Number of molecules3
Total formula weight415.0
All*Total formula weight25016.7
*Water molecules are not included.

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PDB entries from 2026-01-28

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