6MPF
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S rRNA | polymer | 1508 | 489636.9 | 1 | Thermus thermophilus HB8 (strain HB8 / ATCC 27634 / DSM 579) | ||
| 2 | B (B) | 30S ribosomal protein S2 | polymer | 234 | 26987.3 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 3 | C (C) | 30S ribosomal protein S3 | polymer | 206 | 22862.4 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 4 | D (D) | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 5 | E (E) | 30S ribosomal protein S5 | polymer | 150 | 16331.1 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 6 | F (F) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TS9 |
| 7 | G (G) | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 8 | H (H) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (P0DOY9) Pfam (PF00410) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 9 | I (I) | 30S ribosomal protein S9 | polymer | 127 | 14279.4 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 10 | J (J) | 30S ribosomal protein S10 | polymer | 98 | 11299.2 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 11 | K (K) | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 12 | L (L) | 30S ribosomal protein S12 | polymer | 124 | 13804.3 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 13 | M (M) | 30S ribosomal protein S13 | polymer | 125 | 14207.7 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 14 | N (N) | 30S ribosomal protein S14 type Z | polymer | 60 | 7027.5 | 1 | UniProt (P0DOY6) Pfam (PF00253) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 15 | O (O) | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 16 | P (P) | 30S ribosomal protein S16 | polymer | 83 | 9924.5 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 17 | Q (Q) | 30S ribosomal protein S17 | polymer | 104 | 12194.5 | 1 | UniProt (P0DOY7) Pfam (PF00366) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 18 | R (R) | 30S ribosomal protein S18 | polymer | 73 | 8497.2 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 19 | S (S) | 30S ribosomal protein S19 | polymer | 80 | 9203.7 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 20 | T (T) | 30S ribosomal protein S20 | polymer | 99 | 10921.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 21 | U (V) | 30S ribosomal protein Thx | polymer | 24 | 2960.5 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | S31 |
| 22 | V (W) | mRNA A-site fragment | polymer | 4 | 1239.8 | 1 | Escherichia coli | ||
| 23 | W (X) | tRNA ASL Escherichia coli Arg1 | polymer | 11 | 3522.2 | 1 | Escherichia coli | ||
| 24 | X (A) | PAROMOMYCIN | non-polymer | 615.6 | 1 | Chemie (PAR) | |||
| 25 | AA, AB, AC, AD, BA... (A, E, J, W, X) | MAGNESIUM ION | non-polymer | 24.3 | 103 | Chemie (MG) | |||
| 26 | SD, WD (D, N) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 23 |
| Total formula weight | 767972.2 | |
| Non-Polymers* | Number of molecules | 106 |
| Total formula weight | 3249.9 | |
| All* | Total formula weight | 771222.1 |
