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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6MPF

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)		16S rRNApolymer1508489636.91Thermus thermophilus HB8 (strain HB8 / ATCC 27634 / DSM 579)
2B
(B)		30S ribosomal protein S2polymer23426987.31UniProt (P80371)
Pfam (PF00318)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
3C
(C)		30S ribosomal protein S3polymer20622862.41UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
4D
(D)		30S ribosomal protein S4polymer20824242.31UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
5E
(E)		30S ribosomal protein S5polymer15016331.11UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
6F
(F)		30S ribosomal protein S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TS9
7G
(G)		30S ribosomal protein S7polymer15517919.81UniProt (P17291)
Pfam (PF00177)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
8H
(H)		30S ribosomal protein S8polymer13815868.61UniProt (P0DOY9)
Pfam (PF00410)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9I
(I)		30S ribosomal protein S9polymer12714279.41UniProt (P80374)
Pfam (PF00380)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
10J
(J)		30S ribosomal protein S10polymer9811299.21UniProt (Q5SHN7)
Pfam (PF00338)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
11K
(K)		30S ribosomal protein S11polymer11912606.41UniProt (P80376)
Pfam (PF00411)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
12L
(L)		30S ribosomal protein S12polymer12413804.31UniProt (Q5SHN3)
Pfam (PF00164)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
13M
(M)		30S ribosomal protein S13polymer12514207.71UniProt (P80377)
Pfam (PF00416)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
14N
(N)		30S ribosomal protein S14 type Zpolymer607027.51UniProt (P0DOY6)
Pfam (PF00253)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
15O
(O)		30S ribosomal protein S15polymer8810447.21UniProt (Q5SJ76)
Pfam (PF00312)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
16P
(P)		30S ribosomal protein S16polymer839924.51UniProt (Q5SJH3)
Pfam (PF00886)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
17Q
(Q)		30S ribosomal protein S17polymer10412194.51UniProt (P0DOY7)
Pfam (PF00366)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
18R
(R)		30S ribosomal protein S18polymer738497.21UniProt (Q5SLQ0)
Pfam (PF01084)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
19S
(S)		30S ribosomal protein S19polymer809203.71UniProt (Q5SHP2)
Pfam (PF00203)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
20T
(T)		30S ribosomal protein S20polymer9910921.11UniProt (P80380)
Pfam (PF01649)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
21U
(V)		30S ribosomal protein Thxpolymer242960.51UniProt (Q5SIH3)
Pfam (PF17070)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)S31
22V
(W)		mRNA A-site fragmentpolymer41239.81Escherichia coli
23W
(X)		tRNA ASL Escherichia coli Arg1polymer113522.21Escherichia coli
24X
(A)		PAROMOMYCINnon-polymer615.61Chemie (PAR)
PubChem (16757804)
PubChem (16760604)
PubChem (17757254)
PubChem (20849281)
PubChem (71191297)
PubChem (23789070)
PubChem (24096964)
PubChem (24867526)
PubChem (24867858)
PubChem (25104843)
PubChem (71188564)
PubChem (44186758)
PubChem (44663324)
PubChem (45358711)
PubChem (44120093)
PubChem (50989619)
PubChem (44251565)
PubChem (66932615)
PubChem (68032118)
PubChem (4689)
PubChem (14951)
PubChem (24176)
PubChem (70878598)
PubChem (71751432)
PubChem (73707499)
PubChem (3040200)
PubChem (91867972)
PubChem (91972181)
PubChem (94469268)
PubChem (98048759)
PubChem (98048761)
PubChem (5702262)
PubChem (121292209)
PubChem (6603975)
PubChem (6604293)
PubChem (122537356)
PubChem (6710686)
PubChem (124226135)
PubChem (53486370)
PubChem (124464537)
PubChem (9809147)
PubChem (125040357)
PubChem (125040359)
PubChem (125121197)
PubChem (129009945)
PubChem (131841783)
PubChem (132275078)
PubChem (12313981)
PubChem (152952600)
PubChem (162873319)
PubChem (58160567)
PubChem (59361026)
PubChem (59800245)
PubChem (70793652)
PubChem (70793824)
PubChem (70795918)
PubChem (71068776)
PubChem (71072581)
PubChem (71072592)
PubChem (91151908)
PubChem (94469269)
PubChem (94469270)
PubChem (94469271)
PubChem (98048758)
PubChem (98048760)
PubChem (101739930)
PubChem (118213779)
PubChem (118705495)
PubChem (122691713)
PubChem (165580)
PubChem (124226132)
PubChem (124226133)
PubChem (124226134)
PubChem (124464538)
PubChem (124761786)
PubChem (124761787)
PubChem (124761788)
PubChem (124761789)
PubChem (125040358)
PubChem (125040360)
PubChem (125121198)
PubChem (6602492)
PubChem (6713982)
PubChem (129014632)
PubChem (129014634)
PubChem (129014635)
PubChem (9961808)
PubChem (129313238)
PubChem (134771120)
PubChem (137404838)
PubChem (161153506)
PubChem (163199098)
PubChem (164850471)
PubChem (172091638)
PubChem (173719997)
25AA, AB, AC, AD, BA...
(A, E, J, W, X)		MAGNESIUM IONnon-polymer24.3103Chemie (MG)
PubChem (888)
26SD, WD
(D, N)		ZINC IONnon-polymer65.42Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains23
Total formula weight767972.2
Non-Polymers*Number of molecules106
Total formula weight3249.9
All*Total formula weight771222.1
*Water molecules are not included.

253795

PDB entries from 2026-05-20

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