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6MPF

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Functional Information from GO Data
ChainGOidnamespacecontents
B0003735molecular_functionstructural constituent of ribosome
B0005840cellular_componentribosome
B0006412biological_processtranslation
B0015935cellular_componentsmall ribosomal subunit
B0019843molecular_functionrRNA binding
B1990904cellular_componentribonucleoprotein complex
C0003676molecular_functionnucleic acid binding
C0003723molecular_functionRNA binding
C0003735molecular_functionstructural constituent of ribosome
C0006412biological_processtranslation
D0003723molecular_functionRNA binding
D0003735molecular_functionstructural constituent of ribosome
D0005840cellular_componentribosome
D0006412biological_processtranslation
D0015935cellular_componentsmall ribosomal subunit
D0019843molecular_functionrRNA binding
D0046872molecular_functionmetal ion binding
D1990904cellular_componentribonucleoprotein complex
E0003723molecular_functionRNA binding
E0003735molecular_functionstructural constituent of ribosome
E0005737cellular_componentcytoplasm
E0005840cellular_componentribosome
E0006412biological_processtranslation
E0015935cellular_componentsmall ribosomal subunit
E0019843molecular_functionrRNA binding
E0043229cellular_componentintracellular organelle
E1990904cellular_componentribonucleoprotein complex
F0003735molecular_functionstructural constituent of ribosome
F0005737cellular_componentcytoplasm
F0005840cellular_componentribosome
F0006412biological_processtranslation
F0019843molecular_functionrRNA binding
F0043229cellular_componentintracellular organelle
F1990904cellular_componentribonucleoprotein complex
G0000049molecular_functiontRNA binding
G0003723molecular_functionRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0005840cellular_componentribosome
G0006412biological_processtranslation
G0015935cellular_componentsmall ribosomal subunit
G0019843molecular_functionrRNA binding
G1990904cellular_componentribonucleoprotein complex
H0003735molecular_functionstructural constituent of ribosome
H0005737cellular_componentcytoplasm
H0005840cellular_componentribosome
H0006412biological_processtranslation
H0019843molecular_functionrRNA binding
H0043229cellular_componentintracellular organelle
H1990904cellular_componentribonucleoprotein complex
I0000049molecular_functiontRNA binding
I0003735molecular_functionstructural constituent of ribosome
I0005840cellular_componentribosome
I0006412biological_processtranslation
I0019843molecular_functionrRNA binding
I0043229cellular_componentintracellular organelle
I1990904cellular_componentribonucleoprotein complex
J0000049molecular_functiontRNA binding
J0003723molecular_functionRNA binding
J0003735molecular_functionstructural constituent of ribosome
J0005840cellular_componentribosome
J0006412biological_processtranslation
J0019843molecular_functionrRNA binding
J1990904cellular_componentribonucleoprotein complex
K0003735molecular_functionstructural constituent of ribosome
K0005840cellular_componentribosome
K0006412biological_processtranslation
K0019843molecular_functionrRNA binding
K1990904cellular_componentribonucleoprotein complex
L0000049molecular_functiontRNA binding
L0003735molecular_functionstructural constituent of ribosome
L0005840cellular_componentribosome
L0006412biological_processtranslation
L0015935cellular_componentsmall ribosomal subunit
L0019843molecular_functionrRNA binding
L1990904cellular_componentribonucleoprotein complex
M0000049molecular_functiontRNA binding
M0003676molecular_functionnucleic acid binding
M0003723molecular_functionRNA binding
M0003735molecular_functionstructural constituent of ribosome
M0005829cellular_componentcytosol
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0015935cellular_componentsmall ribosomal subunit
M0019843molecular_functionrRNA binding
M1990904cellular_componentribonucleoprotein complex
N0003735molecular_functionstructural constituent of ribosome
N0005737cellular_componentcytoplasm
N0005840cellular_componentribosome
N0006412biological_processtranslation
N0008270molecular_functionzinc ion binding
N0015935cellular_componentsmall ribosomal subunit
N0019843molecular_functionrRNA binding
N0043229cellular_componentintracellular organelle
N0046872molecular_functionmetal ion binding
N1990904cellular_componentribonucleoprotein complex
O0003735molecular_functionstructural constituent of ribosome
O0005737cellular_componentcytoplasm
O0005840cellular_componentribosome
O0006412biological_processtranslation
O0019843molecular_functionrRNA binding
O0022627cellular_componentcytosolic small ribosomal subunit
O0043229cellular_componentintracellular organelle
O1990904cellular_componentribonucleoprotein complex
P0003735molecular_functionstructural constituent of ribosome
P0005737cellular_componentcytoplasm
P0005840cellular_componentribosome
P0006412biological_processtranslation
P0043229cellular_componentintracellular organelle
P1990904cellular_componentribonucleoprotein complex
Q0003735molecular_functionstructural constituent of ribosome
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
Q0019843molecular_functionrRNA binding
Q0022627cellular_componentcytosolic small ribosomal subunit
Q1990904cellular_componentribonucleoprotein complex
R0003735molecular_functionstructural constituent of ribosome
R0005840cellular_componentribosome
R0006412biological_processtranslation
S0003723molecular_functionRNA binding
S0003735molecular_functionstructural constituent of ribosome
S0005840cellular_componentribosome
S0006412biological_processtranslation
S0015935cellular_componentsmall ribosomal subunit
T0003723molecular_functionRNA binding
T0003735molecular_functionstructural constituent of ribosome
T0005840cellular_componentribosome
T0006412biological_processtranslation
T0019843molecular_functionrRNA binding
T1990904cellular_componentribonucleoprotein complex
V0005840cellular_componentribosome
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue PAR A 1601
ChainResidue
AG1387
AC1389
AA1390
AC1467
AG1468
AA1469
AA1470
AG1471
AU1472

site_idAC2
Number of Residues1
Detailsbinding site for residue MG A 1602
ChainResidue
AA837

site_idAC3
Number of Residues2
Detailsbinding site for residue MG A 1603
ChainResidue
AG571
AG627

site_idAC4
Number of Residues4
Detailsbinding site for residue MG A 1605
ChainResidue
AG587
AU588
AG616
AC617

site_idAC5
Number of Residues2
Detailsbinding site for residue MG A 1606
ChainResidue
AA566
AG567

site_idAC6
Number of Residues3
Detailsbinding site for residue MG A 1607
ChainResidue
AC398
AA530
AG531

site_idAC7
Number of Residues4
Detailsbinding site for residue MG A 1608
ChainResidue
AU816
AG829
AG830
AMG1625

site_idAC8
Number of Residues2
Detailsbinding site for residue MG A 1609
ChainResidue
AG132
AG133

site_idAC9
Number of Residues4
Detailsbinding site for residue MG A 1610
ChainResidue
AG100
AG319
AA320
AG321

site_idAD1
Number of Residues3
Detailsbinding site for residue MG A 1611
ChainResidue
AC58
AU382
AG383

site_idAD2
Number of Residues2
Detailsbinding site for residue MG A 1613
ChainResidue
AG559
AG560

site_idAD3
Number of Residues3
Detailsbinding site for residue MG A 1614
ChainResidue
AC911
AC913
AG1324

site_idAD4
Number of Residues2
Detailsbinding site for residue MG A 1615
ChainResidue
AG921
AG922

site_idAD5
Number of Residues1
Detailsbinding site for residue MG A 1616
ChainResidue
AG1205

site_idAD6
Number of Residues2
Detailsbinding site for residue MG A 1617
ChainResidue
AU14
AU17

site_idAD7
Number of Residues2
Detailsbinding site for residue MG A 1618
ChainResidue
AG371
AG372

site_idAD8
Number of Residues2
Detailsbinding site for residue MG A 1619
ChainResidue
AC732
AG733

site_idAD9
Number of Residues1
Detailsbinding site for residue MG A 1620
ChainResidue
AA749

site_idAE1
Number of Residues1
Detailsbinding site for residue MG A 1621
ChainResidue
AA751

site_idAE2
Number of Residues1
Detailsbinding site for residue MG A 1623
ChainResidue
AA763

site_idAE3
Number of Residues1
Detailsbinding site for residue MG A 1624
ChainResidue
AC561

site_idAE4
Number of Residues2
Detailsbinding site for residue MG A 1625
ChainResidue
AG830
AMG1608

site_idAE5
Number of Residues3
Detailsbinding site for residue MG A 1626
ChainResidue
AG489
AA492
AA493

site_idAE6
Number of Residues2
Detailsbinding site for residue MG A 1627
ChainResidue
AU543
AC545

site_idAE7
Number of Residues1
Detailsbinding site for residue MG A 1628
ChainResidue
AA16

site_idAE8
Number of Residues1
Detailsbinding site for residue MG A 1629
ChainResidue
AG21

site_idAE9
Number of Residues4
Detailsbinding site for residue MG A 1630
ChainResidue
AG578
AC579
AG580
AU581

site_idAF1
Number of Residues2
Detailsbinding site for residue MG A 1631
ChainResidue
AG835
AG846

site_idAF2
Number of Residues1
Detailsbinding site for residue MG A 1632
ChainResidue
AA914

site_idAF3
Number of Residues2
Detailsbinding site for residue MG A 1633
ChainResidue
AC911
AU1326

site_idAF4
Number of Residues1
Detailsbinding site for residue MG A 1635
ChainResidue
AA604

site_idAF5
Number of Residues3
Detailsbinding site for residue MG A 1636
ChainResidue
AA941
AG1179
AU1180

site_idAF6
Number of Residues1
Detailsbinding site for residue MG A 1637
ChainResidue
AA1341

site_idAF7
Number of Residues3
Detailsbinding site for residue MG A 1638
ChainResidue
AG1035
AC1036
AG1178

site_idAF8
Number of Residues4
Detailsbinding site for residue MG A 1639
ChainResidue
AG1035
AC1036
AG1178
AG1179

site_idAF9
Number of Residues5
Detailsbinding site for residue MG A 1640
ChainResidue
AG294
AA295
AG541
AU543
AG549

site_idAG1
Number of Residues1
Detailsbinding site for residue MG A 1641
ChainResidue
AG319

site_idAG2
Number of Residues4
Detailsbinding site for residue MG A 1642
ChainResidue
AU554
AA555
AA556
AA557

site_idAG3
Number of Residues1
Detailsbinding site for residue MG A 1643
ChainResidue
AG875

site_idAG4
Number of Residues2
Detailsbinding site for residue MG A 1644
ChainResidue
AA1092
AC1170

site_idAG5
Number of Residues3
Detailsbinding site for residue MG A 1645
ChainResidue
AA842
AC843
AG1061

site_idAG6
Number of Residues3
Detailsbinding site for residue MG A 1646
ChainResidue
AG1076
AG1369
AG1050

site_idAG7
Number of Residues3
Detailsbinding site for residue MG A 1647
ChainResidue
AU1077
AC1078
AG1090

site_idAG8
Number of Residues1
Detailsbinding site for residue MG A 1649
ChainResidue
AG1503

site_idAG9
Number of Residues5
Detailsbinding site for residue MG A 1650
ChainResidue
AA1476
AA1477
AG1485
AG1498
AMG1652

site_idAH1
Number of Residues5
Detailsbinding site for residue MG A 1651
ChainResidue
AU1475
AA1476
AA1477
AG1481
AG1482

site_idAH2
Number of Residues5
Detailsbinding site for residue MG A 1652
ChainResidue
AA1477
AG1482
AA1484
AG1485
AMG1650

site_idAH3
Number of Residues1
Detailsbinding site for residue MG A 1654
ChainResidue
AA201

site_idAH4
Number of Residues3
Detailsbinding site for residue MG A 1655
ChainResidue
AA109
AG110
AG284

site_idAH5
Number of Residues1
Detailsbinding site for residue MG A 1656
ChainResidue
AC347

site_idAH6
Number of Residues2
Detailsbinding site for residue MG A 1658
ChainResidue
AA765
AA777

site_idAH7
Number of Residues3
Detailsbinding site for residue MG A 1659
ChainResidue
AC1284
AG1285
VASP5

site_idAH8
Number of Residues5
Detailsbinding site for residue MG A 1660
ChainResidue
AA546
AC547
AU548
AG549
AG550

site_idAH9
Number of Residues2
Detailsbinding site for residue MG A 1662
ChainResidue
AU517
AA518

site_idAI1
Number of Residues2
Detailsbinding site for residue MG A 1663
ChainResidue
AC487
AG488

site_idAI2
Number of Residues4
Detailsbinding site for residue MG A 1664
ChainResidue
AC501
AG512
LPRO48
LASN49

site_idAI3
Number of Residues7
Detailsbinding site for residue MG A 1665
ChainResidue
AC114
AG117
AU118
AG119
AC230
AG231
AC232

site_idAI4
Number of Residues3
Detailsbinding site for residue MG A 1666
ChainResidue
AC168
AC169
AA203

site_idAI5
Number of Residues2
Detailsbinding site for residue MG A 1667
ChainResidue
AA102
AG326

site_idAI6
Number of Residues3
Detailsbinding site for residue MG A 1668
ChainResidue
AG69
AG70
AU92

site_idAI7
Number of Residues3
Detailsbinding site for residue MG A 1669
ChainResidue
AG61
AU62
AG98

site_idAI8
Number of Residues1
Detailsbinding site for residue MG A 1671
ChainResidue
AU20

site_idAI9
Number of Residues4
Detailsbinding site for residue MG A 1673
ChainResidue
AC501
AG513
LPRO48
WC3

site_idAJ1
Number of Residues3
Detailsbinding site for residue MG A 1674
ChainResidue
AG862
AG863
AU888

site_idAJ2
Number of Residues1
Detailsbinding site for residue MG A 1675
ChainResidue
AA892

site_idAJ3
Number of Residues1
Detailsbinding site for residue MG A 1676
ChainResidue
AG1070

site_idAJ4
Number of Residues4
Detailsbinding site for residue MG A 1677
ChainResidue
AA1219
AA1280
AU1282
AC1316

site_idAJ5
Number of Residues3
Detailsbinding site for residue MG A 1678
ChainResidue
AA591
AA592
AG593

site_idAJ6
Number of Residues3
Detailsbinding site for residue MG A 1680
ChainResidue
AC323
AA324
AC325

site_idAJ7
Number of Residues1
Detailsbinding site for residue MG A 1681
ChainResidue
AA310

site_idAJ8
Number of Residues3
Detailsbinding site for residue MG A 1682
ChainResidue
AU499
AA515
AA516

site_idAJ9
Number of Residues2
Detailsbinding site for residue MG A 1683
ChainResidue
AU1031
NALA2

site_idAK1
Number of Residues5
Detailsbinding site for residue MG A 1684
ChainResidue
AC901
AG902
AG904
AU1372
AU1373

site_idAK2
Number of Residues2
Detailsbinding site for residue MG A 1685
ChainResidue
AG632
AG633

site_idAK3
Number of Residues1
Detailsbinding site for residue MG A 1686
ChainResidue
AG1367

site_idAK4
Number of Residues1
Detailsbinding site for residue MG A 1687
ChainResidue
AG610

site_idAK5
Number of Residues1
Detailsbinding site for residue MG A 1688
ChainResidue
AG357

site_idAK6
Number of Residues2
Detailsbinding site for residue MG A 1689
ChainResidue
AA53
AA348

site_idAK7
Number of Residues2
Detailsbinding site for residue MG A 1690
ChainResidue
AC48
AU49

site_idAK8
Number of Residues1
Detailsbinding site for residue MG A 1691
ChainResidue
AG352

site_idAK9
Number of Residues1
Detailsbinding site for residue MG A 1692
ChainResidue
AU45

site_idAL1
Number of Residues1
Detailsbinding site for residue MG A 1693
ChainResidue
AG880

site_idAL2
Number of Residues1
Detailsbinding site for residue MG A 1694
ChainResidue
AA555

site_idAL3
Number of Residues3
Detailsbinding site for residue MG A 1695
ChainResidue
AG444
AA445
AA446

site_idAL4
Number of Residues4
Detailsbinding site for residue MG A 1696
ChainResidue
AG46
AC361
AU362
AG389

site_idAL5
Number of Residues1
Detailsbinding site for residue MG A 1697
ChainResidue
AU544

site_idAL6
Number of Residues1
Detailsbinding site for residue MG A 1698
ChainResidue
AG570

site_idAL7
Number of Residues1
Detailsbinding site for residue MG A 1699
ChainResidue
AG1383

site_idAL8
Number of Residues4
Detailsbinding site for residue ZN D 301
ChainResidue
DCYS9
DCYS12
DCYS26
DCYS31

site_idAL9
Number of Residues2
Detailsbinding site for residue MG J 201
ChainResidue
AC949
JLYS57

site_idAM1
Number of Residues4
Detailsbinding site for residue MG J 202
ChainResidue
AC949
AG950
JLYS57
JARG60

site_idAM2
Number of Residues5
Detailsbinding site for residue ZN N 101
ChainResidue
NCYS24
NCYS27
NARG29
NCYS40
NCYS43

site_idAM3
Number of Residues2
Detailsbinding site for residue MG X 101
ChainResidue
XG31
XRSP32

Functional Information from PROSITE/UniProt
site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. DvLvtaFInkimrdGKKnlaarIFydA
ChainResidueDetails
GASP20-ALA46

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GiaILSTSkGVLtdreAR
ChainResidueDetails
HGLY108-ARG125

site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaS.GLqVksivDdTPvPHN
ChainResidueDetails
KILE95-ASN117

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
ChainResidueDetails
LLYS46-ARG53

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIiEsRPIS
ChainResidueDetails
QGLY54-SER66

site_idPS00057
Number of Residues24
DetailsRIBOSOMAL_S18 Ribosomal protein S18 signature. RDYrn.VevLkrFLSEt.GKIlprRR
ChainResidueDetails
RARG32-ARG55

site_idPS00063
Number of Residues16
DetailsALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LAKTIKraRIlGLlPF
ChainResidueDetails
RLEU66-PHE81

site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqhvpvyItenmVGhkLGEFapT
ChainResidueDetails
SASN53-THR77

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGksGQidAiklGiARAL
ChainResidueDetails
IGLY67-LEU85

site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. ArrsGAqvsGPIpLPT
ChainResidueDetails
JALA27-THR42

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. LseHLkvhKkDhhShrgLlmMvgqrrrLlrY
ChainResidueDetails
OLEU39-TYR69

site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvrcgrarsvyrfFGLCRiCLR
ChainResidueDetails
NARG23-ARG45

site_idPS00548
Number of Residues35
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewaaqGrVplHt..LranIDygfalarTtyGvlG
ChainResidueDetails
CALA163-GLY197

site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFgAlvVVGDrq.GrVGlGfgkap.EVpl.AV
ChainResidueDetails
EGLY23-VAL55

site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV
ChainResidueDetails
DLEU97-VAL121

site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ
ChainResidueDetails
MARG88-GLN101

site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkELLEAGVHFG
ChainResidueDetails
BVAL7-GLY18

site_idPS01048
Number of Residues10
DetailsRIBOSOMAL_S6 Ribosomal protein S6 signature. GlRRLAYpIA
ChainResidueDetails
FGLY44-ALA53

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:11866529
ChainResidueDetails
NCYS24
NCYS27
NCYS40
NCYS43

222624

PDB entries from 2024-07-17

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