6LKQ

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	30S ribosomal protein S2	polymer	218	24253.9	1	UniProt (C3TPN2) Pfam (PF00318) In PDB	Escherichia coli
2	B	30S ribosomal protein S3	polymer	206	23078.8	1	UniProt (A0A376HTV6) In PDB	Escherichia coli
3	C	30S ribosomal protein S4	polymer	205	23383.0	1	UniProt (A0A4P8BV83) Pfam (PF00163) Pfam (PF01479) In PDB	Escherichia coli
4	D	30S ribosomal protein S5	polymer	150	15804.3	1	UniProt (F4SQ30) In PDB	Escherichia coli
5	E	30S ribosomal protein S6	polymer	100	11669.4	1	UniProt (A0A3L2GT12) In PDB	Escherichia coli
6	F	30S ribosomal protein S7	polymer	151	16861.5	1	UniProt (D6I218) In PDB	Escherichia coli
7	G	30S ribosomal protein S8	polymer	129	14015.4	1	UniProt (U9ZUM7) In PDB	Escherichia coli
8	H	30S ribosomal protein S9	polymer	127	14554.9	1	UniProt (D8A919) Pfam (PF00380) In PDB	Escherichia coli
9	I	30S ribosomal protein S10	polymer	98	11197.0	1	UniProt (A0A5B9AU26) In PDB	Escherichia coli
10	J	30S ribosomal protein S11	polymer	117	12487.2	1	UniProt (A0A4P8B3R1) In PDB	Escherichia coli
11	K	30S ribosomal protein S12	polymer	123	13637.0	1	UniProt (L3C3P4) In PDB	Escherichia coli
12	L	30S ribosomal protein S13	polymer	114	12625.8	1	UniProt (A0A069XLE9) In PDB	Escherichia coli
13	M	30S ribosomal protein S14	polymer	100	11489.4	1	UniProt (A0A090BZT4) Pfam (PF00253) In PDB	Escherichia coli
14	N	30S ribosomal protein S15	polymer	88	10159.6	1	UniProt (A0A029IK47) In PDB	Escherichia coli
15	O	30S ribosomal protein S16	polymer	82	9207.6	1	UniProt (A0A029IMB2) In PDB	Escherichia coli
16	P	30S ribosomal protein S17	polymer	80	9263.9	1	UniProt (T6LV72) In PDB	Escherichia coli
17	Q	30S ribosomal protein S18	polymer	55	6466.5	1	UniProt (E9TDX6) In PDB	Escherichia coli
18	R	30S ribosomal protein S19	polymer	79	9057.6	1	UniProt (S1EA57) In PDB	Escherichia coli
19	S	30S ribosomal protein S20	polymer	85	9506.2	1	UniProt (D7ZAS2) In PDB	Escherichia coli
20	T	30S ribosomal protein S21	polymer	51	6067.1	1	UniProt (A0A5C9AJ78) Pfam (PF01165) In PDB	Escherichia coli
21	U	50S ribosomal protein L2	polymer	271	29663.2	1	UniProt (A0A1X3LPI5) In PDB	Escherichia coli
22	V	50S ribosomal protein L3	polymer	209	22277.5	1	UniProt (I2X6U5) In PDB	Escherichia coli
23	W	50S ribosomal protein L4	polymer	201	22121.6	1	UniProt (L3C159) In PDB	Escherichia coli
24	X	50S ribosomal protein L5	polymer	177	20073.2	1	UniProt (H4IXW7) In PDB	Escherichia coli
25	Y	50S ribosomal protein L6	polymer	176	18801.6	1	UniProt (V0AIU3) In PDB	Escherichia coli
26	Z	50S ribosomal protein L11	polymer	141	14763.2	1	UniProt (H4J053) In PDB	Escherichia coli
27	0	50S ribosomal protein L13	polymer	142	16050.6	1	UniProt (S1EW51) In PDB	Escherichia coli
28	1	50S ribosomal protein L14	polymer	122	13451.9	1	UniProt (V0YSM1) In PDB	Escherichia coli
29	2	50S ribosomal protein L15	polymer	143	14877.3	1	UniProt (A0A037Y8L6) Pfam (PF00828) In PDB	Escherichia coli
30	3	50S ribosomal protein L16	polymer	136	15312.3	1	UniProt (H4LI23) In PDB	Escherichia coli
31	4	50S ribosomal protein L17	polymer	120	13721.9	1	UniProt (A0A1X3LC97) In PDB	Escherichia coli
32	5	50S ribosomal protein L18	polymer	116	12663.5	1	UniProt (H4JDL8) In PDB	Escherichia coli
33	6	50S ribosomal protein L19	polymer	114	13028.1	1	UniProt (A0A0F6C7T5) In PDB	Escherichia coli
34	8	50S ribosomal protein L20	polymer	117	13396.8	1	UniProt (V6FS92) In PDB	Escherichia coli
35	9	50S ribosomal protein L21	polymer	103	11586.4	1	UniProt (L4V445) In PDB	Escherichia coli
36	a	50S ribosomal protein L22	polymer	110	12253.4	1	UniProt (F4TL38) In PDB	Escherichia coli
37	b	50S ribosomal protein L23	polymer	93	10546.5	1	UniProt (S1EUY1) In PDB	Escherichia coli
38	c	50S ribosomal protein L24	polymer	102	11078.9	1	UniProt (F4TL32) In PDB	Escherichia coli
39	d	50S ribosomal protein L25	polymer	94	10713.5	1	UniProt (D7Y4U5) In PDB	Escherichia coli
40	e	50S ribosomal protein L27	polymer	79	8476.7	1	UniProt (A0A5D8K7F9) In PDB	Escherichia coli
41	f	50S ribosomal protein L28	polymer	77	8896.4	1	UniProt (A0A5B7P765) In PDB	Escherichia coli
42	g	50S ribosomal protein L29	polymer	63	7286.5	1	UniProt (I2X6R6) In PDB	Escherichia coli
43	h	50S ribosomal protein L30	polymer	58	6423.6	1	UniProt (A0A073FR56) In PDB	Escherichia coli
44	i	50S ribosomal protein L32	polymer	56	6332.2	1	UniProt (D7XI28) In PDB	Escherichia coli
45	j	50S ribosomal protein L33	polymer	50	5814.8	1	UniProt (L3NSS9) In PDB	Escherichia coli
46	k	50S ribosomal protein L34	polymer	46	5397.5	1	UniProt (A0A1X3IEM2) In PDB	Escherichia coli
47	l	50S ribosomal protein L35	polymer	64	7181.8	1	UniProt (L3P377) In PDB	Escherichia coli
48	m	50S ribosomal protein L36	polymer	38	4377.4	1	UniProt (F4V714) In PDB	Escherichia coli
49	n	50S ribosomal protein L10	polymer	163	17634.5	1	UniProt (A0A1X3LA41) In PDB	Escherichia coli
50	o, p, q, r	50S ribosomal protein L7/L12	polymer	30	3300.9	4	UniProt (A0A4C9D1M4) Pfam (PF16320) In PDB	Escherichia coli
51	s	16S ribosomal RNA	polymer	1532	496563.1	1	GenBank (1726022446)	Escherichia coli
52	t	23S ribosomal RNA	polymer	2903	941306.2	1	GenBank (1036415628)	Escherichia coli
53	u	5S ribosomal RNA	polymer	118	38177.8	1	GenBank (1727529157)	Escherichia coli
54	v	Peptide chain release factor 3	polymer	525	59152.4	1	UniProt (C3SE77) Pfam (PF22042) Pfam (PF16658) Pfam (PF00009) In PDB	Escherichia coli	RF-3
55	w	messenger RNA	polymer	6	1900.2	1		Escherichia coli
56	y, z, 7, AA, BA	Viomycin	polymer	6	703.7	5	BIRD (PRD_000226)	synthetic construct

Sequence modifications

n: 1 - 163 (UniProt: A0A1X3LA41)

PDB	External Database	Details
Leu 85	Ser 85	conflict
Glu 160	Asp 160	conflict

Contents of the asymmetric unit

Polymers	Number of chains	63
	Total formula weight	2192810.3
All*	Total formula weight	2192810.3

*Water molecules are not included.