6LDM
Structural basis of G-quadruplex DNA recognition by the yeast telomeric protein Rap1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA-binding protein RAP1 | polymer | 291 | 33648.6 | 1 | UniProt (P11938) Pfam (PF00249) Pfam (PF09197) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Repressor/activator site-binding protein,SBF-E,TUF |
2 | B | G-guadruplex DNA | polymer | 19 | 6034.9 | 1 | synthetic construct | ||
3 | A | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
4 | A | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 122.1 | 1 | Chemie (TRS) | |||
5 | A, B | SODIUM ION | non-polymer | 23.0 | 11 | Chemie (NA) | |||
6 | B | POTASSIUM ION | non-polymer | 39.1 | 5 | Chemie (K) | |||
7 | water | water | 18.0 | 43 | Chemie (HOH) |
Sequence modifications
A: 353 - 597 (UniProt: P11938)
PDB | External Database | Details |
---|---|---|
His 307 | - | expression tag |
His 308 | - | expression tag |
His 309 | - | expression tag |
His 310 | - | expression tag |
His 311 | - | expression tag |
His 312 | - | expression tag |
Ser 313 | - | expression tag |
Ser 314 | - | expression tag |
Gly 315 | - | expression tag |
Leu 316 | - | expression tag |
Val 317 | - | expression tag |
Pro 318 | - | expression tag |
Arg 319 | - | expression tag |
Gly 320 | - | expression tag |
Ser 321 | - | expression tag |
Gly 322 | - | expression tag |
Met 323 | - | expression tag |
Lys 324 | - | expression tag |
Glu 325 | - | expression tag |
Thr 326 | - | expression tag |
Ala 327 | - | expression tag |
Ala 328 | - | expression tag |
Ala 329 | - | expression tag |
Lys 330 | - | expression tag |
Phe 331 | - | expression tag |
Glu 332 | - | expression tag |
Arg 333 | - | expression tag |
Gln 334 | - | expression tag |
His 335 | - | expression tag |
Met 336 | - | expression tag |
Asp 337 | - | expression tag |
Ser 338 | - | expression tag |
Pro 339 | - | expression tag |
Asp 340 | - | expression tag |
Leu 341 | - | expression tag |
Gly 342 | - | expression tag |
Thr 343 | - | expression tag |
Gly 344 | - | expression tag |
Ser 345 | - | expression tag |
Glu 346 | - | expression tag |
Asn 347 | - | expression tag |
Leu 348 | - | expression tag |
Tyr 349 | - | expression tag |
Phe 350 | - | expression tag |
Gln 351 | - | expression tag |
Gly 352 | - | expression tag |
- | Glu 570 | deletion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 39683.4 | |
Non-Polymers* | Number of molecules | 18 |
Total formula weight | 662.6 | |
All* | Total formula weight | 40346.0 |