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6LDM

Structural basis of G-quadruplex DNA recognition by the yeast telomeric protein Rap1

Functional Information from GO Data
ChainGOidnamespacecontents
A0000723biological_processtelomere maintenance
A0003677molecular_functionDNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue GOL A 601
ChainResidue
APHE548
AMET573

site_idAC2
Number of Residues6
Detailsbinding site for residue TRS A 602
ChainResidue
ATHR384
AHIS385
ATHR386
AARG447
ATHR537
AALA540

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 603
ChainResidue
AARG408
AVAL409
BDG13
BDT18
BNA109
AHIS405

site_idAC4
Number of Residues3
Detailsbinding site for residue NA A 604
ChainResidue
AASN401
AARG404
AHIS405

site_idAC5
Number of Residues5
Detailsbinding site for residue NA A 605
ChainResidue
AALA361
APHE363
BDG12
BDG13
BHOH213

site_idAC6
Number of Residues9
Detailsbinding site for residue K B 101
ChainResidue
BDG4
BDG5
BDG8
BDG9
BDG12
BDG13
BDG16
BDG17
BK102

site_idAC7
Number of Residues11
Detailsbinding site for residue K B 102
ChainResidue
BDG3
BDG4
BDG7
BDG8
BDG11
BDG12
BDG15
BDG16
BK101
BK103
BK103

site_idAC8
Number of Residues10
Detailsbinding site for residue K B 103
ChainResidue
BDG3
BDG3
BDG7
BDG7
BDG11
BDG11
BDG15
BDG15
BK102
BK102

site_idAC9
Number of Residues2
Detailsbinding site for residue K B 104
ChainResidue
BDT2
BDG3

site_idAD1
Number of Residues1
Detailsbinding site for residue K B 105
ChainResidue
BDT18

site_idAD2
Number of Residues5
Detailsbinding site for residue NA B 106
ChainResidue
BDG8
BDG9
BDG11
BDG12
BHOH201

site_idAD3
Number of Residues3
Detailsbinding site for residue NA B 107
ChainResidue
BDG3
BHOH202
BHOH207

site_idAD4
Number of Residues4
Detailsbinding site for residue NA B 108
ChainResidue
BDG4
BDG5
BDT6
BDG7

site_idAD5
Number of Residues6
Detailsbinding site for residue NA B 109
ChainResidue
AVAL409
ANA603
BDG5
BDG13
BDG17
BDT18

site_idAD6
Number of Residues3
Detailsbinding site for residue NA B 110
ChainResidue
BDT6
BDG7
BDG8

site_idAD7
Number of Residues3
Detailsbinding site for residue NA B 111
ChainResidue
BDG7
BDG8
BDG11

site_idAD8
Number of Residues3
Detailsbinding site for residue NA B 112
ChainResidue
BDT2
BDG15
BDG16

site_idAD9
Number of Residues3
Detailsbinding site for residue NA B 113
ChainResidue
AHOH706
BDG13
BHOH208

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues23
DetailsDNA_BIND: H-T-H motif => ECO:0000255|PROSITE-ProRule:PRU00625
ChainResidueDetails
ATYR388-LEU411

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:17330950
ChainResidueDetails
ATHR486

218853

PDB entries from 2024-04-24

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