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6K0R

Ruvbl1-Ruvbl2 with truncated domain II in complex with phosphorylated Cordycepin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, G, H...
(A, B, C, G, H...)
RuvB-like 1,RuvB-like 1polymer35538840.06UniProt (Q9Y265)
Pfam (PF06068)
Pfam (PF17856)
Homo sapiens (Human)49 kDa TATA box-binding protein-interacting protein,49 kDa TBP-interacting protein,54 kDa erythrocyte cytosolic protein,ECP-54,INO80 complex subunit H,Nuclear matrix protein 238,NMP 238,Pontin 52,TIP49a,TIP60-associated protein 54-alpha,TAP54-alpha,49 kDa TATA box-binding protein-interacting protein,49 kDa TBP-interacting protein,54 kDa erythrocyte cytosolic protein,ECP-54,INO80 complex subunit H,Nuclear matrix protein 238,NMP 238,Pontin 52,TIP49a,TIP60-associated protein 54-alpha,TAP54-alpha
2D, E, F, J, K...
(D, E, F, J, K...)
RuvB-like 2,RuvB-like 2polymer36640264.06UniProt (Q9Y230)
Pfam (PF06068)
Pfam (PF17856)
Homo sapiens (Human)48 kDa TATA box-binding protein-interacting protein,48 kDa TBP-interacting protein,51 kDa erythrocyte cytosolic protein,ECP-51,INO80 complex subunit J,Repressing pontin 52,Reptin 52,TIP49b,TIP60-associated protein 54-beta,TAP54-beta,48 kDa TATA box-binding protein-interacting protein,48 kDa TBP-interacting protein,51 kDa erythrocyte cytosolic protein,ECP-51,INO80 complex subunit J,Repressing pontin 52,Reptin 52,TIP49b,TIP60-associated protein 54-beta,TAP54-beta
3M
(A)
ADENOSINE-5'-DIPHOSPHATEnon-polymer427.21Chemie (ADP)
4N, O, P, S, T...
(B, C, D, F, G...)
[(2~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphatenon-polymer411.28Chemie (CUU)
5Q, Z
(D, L)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
6R, W
(E, J)
3'-DEOXYADENOSINE-5'-TRIPHOSPHATEnon-polymer491.22Chemie (3AT)
7Y
(L)
[(2~{R},3~{S},4~{S})-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphatenon-polymer294.11Chemie (CU0)
8AA, BA, CA, DA
(A, E, F, J)
waterwater18.06Chemie (HOH)
Sequence modifications
A, B, C, G, H, I: 2 - 229 (UniProt: Q9Y265)
PDBExternal DatabaseDetails
Gly -1-expression tag
Pro 0-expression tag
Ser 1-expression tag
A, B, C, G, H, I: 234 - 456 (UniProt: Q9Y265)
PDBExternal DatabaseDetails
Gly 230-linker
Pro 231-linker
Pro 232-linker
Gly 233-linker
D, E, F, J, K, L: 1 - 233 (UniProt: Q9Y230)
PDBExternal DatabaseDetails
Gly -2-expression tag
Gly -1-expression tag
Ser 0-expression tag
D, E, F, J, K, L: 238 - 463 (UniProt: Q9Y230)
PDBExternal DatabaseDetails
Gly 234-linker
Pro 235-linker
Pro 236-linker
Gly 237-linker
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight474623.8
Non-Polymers*Number of molecules14
Total formula weight5041.9
All*Total formula weight479665.7
*Water molecules are not included.

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PDB entries from 2025-07-09

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