6JWI
Yeast Npl4 in complex with Lys48-linked diubiquitin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (I, G) | Ubiqutin | polymer | 76 | 8623.7 | 2 | UniProt (A5JUZ1) Pfam (PF00240) UniProt (by SIFTS) (P62984) | Mus musculus (Mouse) | |
| 2 | B, C (A, E) | Nuclear protein localization protein 4 | polymer | 473 | 53939.5 | 2 | UniProt (P33755) Pfam (PF05020) Pfam (PF05021) | Saccharomyces cerevisiae S288c (Baker's yeast) | HMG-CoA reductase degradation protein 4 |
| 3 | E, F, G, H, I... (B, C, D, F, H...) | alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose | branched | 342.3 | 14 | In PDB BIRD (PRD_900006) GlyTouCan (G92130SN) | trehalose | ||
| 4 | AA, S, T, Z (E, A) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 5 | BA, CA, DA, EA, U... (E, A) | BICINE | non-polymer | 163.2 | 9 | Chemie (BCN) | |||
| 6 | FA, GA, HA (I, A, E) | water | water | 18.0 | 170 | Chemie (HOH) |
Sequence modifications
A, E: 113 - 580 (UniProt: P33755)
| PDB | External Database | Details |
|---|---|---|
| Gly 108 | - | expression tag |
| Pro 109 | - | expression tag |
| Leu 110 | - | expression tag |
| Gly 111 | - | expression tag |
| Ser 112 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 125126.5 | |
| Branched | Number of molecules | 14 |
| Total formula weight | 4792.2 | |
| Non-Polymers* | Number of molecules | 13 |
| Total formula weight | 1730.2 | |
| All* | Total formula weight | 131648.9 |
