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6JWI

Yeast Npl4 in complex with Lys48-linked diubiquitin

Functional Information from GO Data
ChainGOidnamespacecontents
A0006511biological_processubiquitin-dependent protein catabolic process
E0006511biological_processubiquitin-dependent protein catabolic process
Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
ILYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
IARG54
IARG72
GARG54
GARG72

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Essential for function
ChainResidueDetails
IHIS68
GHIS68

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P62987
ChainResidueDetails
ISER65
GSER65

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000250|UniProtKB:P62987
ChainResidueDetails
IGLY76
GGLY76

site_idSWS_FT_FI5
Number of Residues14
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62987
ChainResidueDetails
GLYS48
GLYS63
ILYS6
ILYS11
ILYS27
ILYS29
ILYS33
ILYS48
ILYS63
GLYS6
GLYS11
GLYS27
GLYS29
GLYS33

site_idSWS_FT_FI6
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
ChainResidueDetails
GGLY76
IGLY76

220472

PDB entries from 2024-05-29

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